Difference between revisions of "RXN-10778"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ARGDECARBOX-RXN == * direction: ** reversible * common-name: ** arginine decarboxylase, biosynthetic * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-10778 == * direction: ** left-to-right * common-name: ** serotonin oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3.4 ec-1.4.3....")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGDECARBOX-RXN ==
+
== Reaction RXN-10778 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** arginine decarboxylase, biosynthetic
+
** serotonin oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.19 ec-4.1.1.19]
+
** [http://enzyme.expasy.org/EC/1.4.3.4 ec-1.4.3.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AGMATHINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[SEROTONIN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12405]]
+
* Gene: [[SJ07831]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6305]], superpathway of putrescine biosynthesis:
+
* [[PWY-6313]], serotonin degradation:
−
** '''4''' reactions found over '''n.a''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY0-1299]], arginine dependent acid resistance:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-40]], putrescine biosynthesis I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6834]], spermidine biosynthesis III:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-43]], putrescine biosynthesis II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR95082
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17644 17644]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00566 R00566]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02908 R02908]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P21170 P21170]
+
{{#set: common-name=serotonin oxidase}}
−
** [http://www.uniprot.org/uniprot/Q9PPF5 Q9PPF5]
+
{{#set: ec-number=ec-1.4.3.4}}
−
** [http://www.uniprot.org/uniprot/Q9JT25 Q9JT25]
 
−
** [http://www.uniprot.org/uniprot/P49726 P49726]
 
−
** [http://www.uniprot.org/uniprot/P22220 P22220]
 
−
** [http://www.uniprot.org/uniprot/P28629 P28629]
 
−
** [http://www.uniprot.org/uniprot/Q43075 Q43075]
 
−
** [http://www.uniprot.org/uniprot/Q9SI64 Q9SI64]
 
−
** [http://www.uniprot.org/uniprot/P72587 P72587]
 
−
** [http://www.uniprot.org/uniprot/P74576 P74576]
 
−
** [http://www.uniprot.org/uniprot/O24128 O24128]
 
−
** [http://www.uniprot.org/uniprot/O23141 O23141]
 
−
** [http://www.uniprot.org/uniprot/Q39827 Q39827]
 
−
** [http://www.uniprot.org/uniprot/O81161 O81161]
 
−
** [http://www.uniprot.org/uniprot/O04429 O04429]
 
−
** [http://www.uniprot.org/uniprot/Q96412 Q96412]
 
−
** [http://www.uniprot.org/uniprot/O81177 O81177]
 
−
** [http://www.uniprot.org/uniprot/O64453 O64453]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=arginine decarboxylase, biosynthetic}}
 
−
{{#set: ec-number=ec-4.1.1.19}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-10778

  • direction:
    • left-to-right
  • common-name:
    • serotonin oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6313, serotonin degradation:
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR95082
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-10778&oldid=139951"