Difference between revisions of "RXN-10827"

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(Created page with "Category:reaction == Reaction PHENYLALANINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** phenylalanine-trna ligase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction ACP-S-ACETYLTRANSFER-RXN == * direction: ** reversible * common-name: ** fatty acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHENYLALANINE--TRNA-LIGASE-RXN ==
+
== Reaction ACP-S-ACETYLTRANSFER-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phenylalanine-trna ligase
+
** fatty acid synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.20 ec-6.1.1.20]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.38 ec-2.3.1.38]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[ACP]][c] '''<=>''' 1 [[ACETYL-ACP]][c] '''+''' 1 [[CO-A]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ04988]]
+
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07745]]
+
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20176]]
+
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ13014]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20825]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ10005]]
+
* Gene: [[SJ00320]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-5966]]:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli):
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR95376
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19414 19414]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=41791 41791]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01624 R01624]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P94283 P94283]
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
+
** [http://www.uniprot.org/uniprot/P08757 P08757]
−
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
+
** [http://www.uniprot.org/uniprot/P07149 P07149]
−
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
+
** [http://www.uniprot.org/uniprot/P12276 P12276]
−
** [http://www.uniprot.org/uniprot/P56145 P56145]
+
** [http://www.uniprot.org/uniprot/P12785 P12785]
−
** [http://www.uniprot.org/uniprot/O67620 O67620]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/O73984 O73984]
+
{{#set: common-name=fatty acid synthase}}
−
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
+
{{#set: ec-number=ec-2.3.1.38|ec-2.3.1.85|ec-2.3.1.86}}
−
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
+
{{#set: nb gene associated=15}}
−
** [http://www.uniprot.org/uniprot/P56146 P56146]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/O27545 O27545]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/O26837 O26837]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O58391 O58391]
 
−
** [http://www.uniprot.org/uniprot/O83938 O83938]
 
−
** [http://www.uniprot.org/uniprot/P47436 P47436]
 
−
** [http://www.uniprot.org/uniprot/O67087 O67087]
 
−
** [http://www.uniprot.org/uniprot/O83059 O83059]
 
−
** [http://www.uniprot.org/uniprot/O84843 O84843]
 
−
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 
−
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 
−
** [http://www.uniprot.org/uniprot/P47437 P47437]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 
−
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 
−
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 
−
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 
−
** [http://www.uniprot.org/uniprot/P43819 P43819]
 
−
** [http://www.uniprot.org/uniprot/P94282 P94282]
 
−
** [http://www.uniprot.org/uniprot/O84481 O84481]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 
−
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 
−
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 
−
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 
−
** [http://www.uniprot.org/uniprot/P43820 P43820]
 
−
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 
−
** [http://www.uniprot.org/uniprot/P15434 P15434]
 
−
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 
−
** [http://www.uniprot.org/uniprot/P37984 P37984]
 
−
** [http://www.uniprot.org/uniprot/P51346 P51346]
 
−
** [http://www.uniprot.org/uniprot/P75563 P75563]
 
−
** [http://www.uniprot.org/uniprot/P75564 P75564]
 
−
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 
−
** [http://www.uniprot.org/uniprot/P95960 P95960]
 
−
** [http://www.uniprot.org/uniprot/P95961 P95961]
 
−
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 
−
** [http://www.uniprot.org/uniprot/P08312 P08312]
 
−
** [http://www.uniprot.org/uniprot/P07395 P07395]
 
−
** [http://www.uniprot.org/uniprot/O42870 O42870]
 
−
** [http://www.uniprot.org/uniprot/O13432 O13432]
 
−
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 
−
** [http://www.uniprot.org/uniprot/O42849 O42849]
 
−
** [http://www.uniprot.org/uniprot/P17921 P17921]
 
−
** [http://www.uniprot.org/uniprot/P17922 P17922]
 
−
** [http://www.uniprot.org/uniprot/P15625 P15625]
 
−
** [http://www.uniprot.org/uniprot/P08425 P08425]
 
−
** [http://www.uniprot.org/uniprot/P15624 P15624]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phenylalanine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.20}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:33, 15 March 2021

Reaction ACP-S-ACETYLTRANSFER-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5966:
    • 2 reactions found over n.a reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli):
    • 5 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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