Difference between revisions of "RXN-10827"

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(Created page with "Category:reaction == Reaction PHENYLALANINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** phenylalanine-trna ligase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-10827 == * direction: ** left-to-right * common-name: ** carboxyphosphonoenolpyruvate phosphonomutase * ec-number: ** [http://enzyme.expa...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHENYLALANINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-10827 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phenylalanine-trna ligase
+
** carboxyphosphonoenolpyruvate phosphonomutase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.20 ec-6.1.1.20]
+
** [http://enzyme.expasy.org/EC/2.7.8.23 ec-2.7.8.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[1-CARBOXYVINYL-CARBOXYPHOSPHONATE]][c] '''=>''' 1 [[CPD-11740]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ02830]]
−
* Gene: [[SJ04988]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07745]]
+
* Gene: [[SJ05283]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ05933]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20176]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ05932]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20825]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10005]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-7769]], phosalacine biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''25''' reactions in the full pathway
 +
* [[PWY-6322]], phosphinothricin tripeptide biosynthesis:
 +
** '''2''' reactions found over '''25''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR112360
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19414 19414]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08868 R08868]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P94283 P94283]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
 
−
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
 
−
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
 
−
** [http://www.uniprot.org/uniprot/P56145 P56145]
 
−
** [http://www.uniprot.org/uniprot/O67620 O67620]
 
−
** [http://www.uniprot.org/uniprot/O73984 O73984]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
 
−
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
 
−
** [http://www.uniprot.org/uniprot/P56146 P56146]
 
−
** [http://www.uniprot.org/uniprot/O27545 O27545]
 
−
** [http://www.uniprot.org/uniprot/O26837 O26837]
 
−
** [http://www.uniprot.org/uniprot/O58391 O58391]
 
−
** [http://www.uniprot.org/uniprot/O83938 O83938]
 
−
** [http://www.uniprot.org/uniprot/P47436 P47436]
 
−
** [http://www.uniprot.org/uniprot/O67087 O67087]
 
−
** [http://www.uniprot.org/uniprot/O83059 O83059]
 
−
** [http://www.uniprot.org/uniprot/O84843 O84843]
 
−
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 
−
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 
−
** [http://www.uniprot.org/uniprot/P47437 P47437]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 
−
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 
−
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 
−
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 
−
** [http://www.uniprot.org/uniprot/P43819 P43819]
 
−
** [http://www.uniprot.org/uniprot/P94282 P94282]
 
−
** [http://www.uniprot.org/uniprot/O84481 O84481]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 
−
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 
−
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 
−
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 
−
** [http://www.uniprot.org/uniprot/P43820 P43820]
 
−
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 
−
** [http://www.uniprot.org/uniprot/P15434 P15434]
 
−
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 
−
** [http://www.uniprot.org/uniprot/P37984 P37984]
 
−
** [http://www.uniprot.org/uniprot/P51346 P51346]
 
−
** [http://www.uniprot.org/uniprot/P75563 P75563]
 
−
** [http://www.uniprot.org/uniprot/P75564 P75564]
 
−
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 
−
** [http://www.uniprot.org/uniprot/P95960 P95960]
 
−
** [http://www.uniprot.org/uniprot/P95961 P95961]
 
−
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 
−
** [http://www.uniprot.org/uniprot/P08312 P08312]
 
−
** [http://www.uniprot.org/uniprot/P07395 P07395]
 
−
** [http://www.uniprot.org/uniprot/O42870 O42870]
 
−
** [http://www.uniprot.org/uniprot/O13432 O13432]
 
−
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 
−
** [http://www.uniprot.org/uniprot/O42849 O42849]
 
−
** [http://www.uniprot.org/uniprot/P17921 P17921]
 
−
** [http://www.uniprot.org/uniprot/P17922 P17922]
 
−
** [http://www.uniprot.org/uniprot/P15625 P15625]
 
−
** [http://www.uniprot.org/uniprot/P08425 P08425]
 
−
** [http://www.uniprot.org/uniprot/P15624 P15624]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phenylalanine-trna ligase}}
+
{{#set: common-name=carboxyphosphonoenolpyruvate phosphonomutase}}
−
{{#set: ec-number=ec-6.1.1.20}}
+
{{#set: ec-number=ec-2.7.8.23}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-10827

  • direction:
    • left-to-right
  • common-name:
    • carboxyphosphonoenolpyruvate phosphonomutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7769, phosalacine biosynthesis:
    • 2 reactions found over 25 reactions in the full pathway
  • PWY-6322, phosphinothricin tripeptide biosynthesis:
    • 2 reactions found over 25 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR112360
  • LIGAND-RXN:





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