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| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** left-to-right | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] |
| | * common-name: | | * common-name: |
| − | ** shikimate dehydrogenase | + | ** peptidoglycan biosynthesis i (meso-diaminopimelate containing) |
| − | * ec-number:
| + | == Reaction(s) found == |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
| + | * [[PHOSNACMURPENTATRANS-RXN]] |
| − | == Reaction formula == | + | == Reaction(s) not found == |
| − | * 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=NACGLCTRANS-RXN NACGLCTRANS-RXN] |
| − | == Gene(s) associated with this reaction ==
| + | {{#set: taxonomic-range=tax-2}} |
| − | * Gene: [[SJ10493]] | + | {{#set: common-name=peptidoglycan biosynthesis i (meso-diaminopimelate containing)}} |
| − | ** Category: [[annotation]]
| + | {{#set: nb reaction found=1}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: completion rate=0.5}} |
| − | ** Category: [[orthology]]
| + | {{#set: nb total reaction=2}} |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) == | |
| − | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] | |
| − | ** '''6''' reactions found over '''5''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P07547 P07547]
| |
| − | ** [http://www.uniprot.org/uniprot/P08566 P08566]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58484 Q58484]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44606 Q44606]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44608 Q44608]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44609 Q44609]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44610 Q44610]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44611 Q44611]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44612 Q44612]
| |
| − | ** [http://www.uniprot.org/uniprot/P15770 P15770]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42947 Q42947]
| |
| − | ** [http://www.uniprot.org/uniprot/O65917 O65917]
| |
| − | </div>
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=shikimate dehydrogenase}} | |
| − | {{#set: ec-number=ec-1.1.1.25}}
| |
| − | {{#set: nb gene associated=1}} | |
| − | {{#set: nb pathway associated=1}}
| |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}} | |
