Difference between revisions of "RXN-10976"

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(Created page with "Category:reaction == Reaction 1.14.99.38-RXN == * direction: ** left-to-right * common-name: ** cholesterol 25-hydroxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...")
(Created page with "Category:reaction == Reaction RXN-12777 == * direction: ** left-to-right * common-name: ** 3-oxo-dihomo γ linolenoyl-[acp] synthase * ec-number: ** [http://enzyme.ex...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 1.14.99.38-RXN ==
+
== Reaction RXN-12777 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** cholesterol 25-hydroxylase
+
** 3-oxo-dihomo γ linolenoyl-[acp] synthase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.14.99.38 ec-1.14.99.38]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CHOLESTEROL]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[CPD-7285]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GAMMA-LINOLENOYL-COA]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14404]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ11479]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7592]], arachidonate biosynthesis III (6-desaturase, mammals):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5353]], arachidonate biosynthesis I (6-desaturase, lower eukaryotes):
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21105 21105]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07218 R07218]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=cholesterol 25-hydroxylase}}
+
{{#set: common-name=3-oxo-dihomo γ linolenoyl-[acp] synthase}}
{{#set: ec-number=ec-1.14.99.38}}
+
{{#set: ec-number=ec-2.3.1}}
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=0}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 13:15, 14 January 2021

Reaction RXN-12777

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-dihomo γ linolenoyl-[acp] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7592, arachidonate biosynthesis III (6-desaturase, mammals):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5353, arachidonate biosynthesis I (6-desaturase, lower eukaryotes):
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "3-oxo-dihomo γ linolenoyl-[acp] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.