Difference between revisions of "RXN-1104"

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(Created page with "Category:reaction == Reaction METHYLMALONYL-COA-DECARBOXYLASE-RXN == * direction: ** reversible * common-name: ** (s)-methylmalonyl-coa decarboxylase * ec-number: ** [http...")
(Created page with "Category:reaction == Reaction RXN-1104 == * direction: ** left-to-right * common-name: ** caffeate 3-o-methyltransferase ** caffeate o-methyltransferase * ec-number: ** [h...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLMALONYL-COA-DECARBOXYLASE-RXN ==
+
== Reaction RXN-1104 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** (s)-methylmalonyl-coa decarboxylase
+
** caffeate 3-o-methyltransferase
 +
** caffeate o-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.41 ec-4.1.1.41]
+
** [http://enzyme.expasy.org/EC/2.1.1.68 ec-2.1.1.68]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-METHYL-MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROPIONYL-COA]][c]
+
* 1 [[CPD-676]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14591]]
+
* Gene: [[SJ07699]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09797]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17434]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-2181]], free phenylpropanoid acid biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7498]], phenylpropanoids methylation (ice plant):
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis:
 +
** '''2''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1121]], suberin monomers biosynthesis:
 +
** '''9''' reactions found over '''20''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR108123
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21396 21396]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20226 20226]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00923 R00923]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q57079 Q57079]
+
** [http://www.uniprot.org/uniprot/Q41086 Q41086]
−
** [http://www.uniprot.org/uniprot/Q56724 Q56724]
+
** [http://www.uniprot.org/uniprot/P28002 P28002]
−
** [http://www.uniprot.org/uniprot/Q57490 Q57490]
+
** [http://www.uniprot.org/uniprot/Q00763 Q00763]
−
** [http://www.uniprot.org/uniprot/Q57111 Q57111]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q57286 Q57286]
+
{{#set: common-name=caffeate 3-o-methyltransferase|caffeate o-methyltransferase}}
−
** [http://www.uniprot.org/uniprot/O86517 O86517]
+
{{#set: ec-number=ec-2.1.1.68}}
−
** [http://www.uniprot.org/uniprot/O52601 O52601]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/O54028 O54028]
+
{{#set: nb pathway associated=4}}
−
** [http://www.uniprot.org/uniprot/O54029 O54029]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/O54030 O54030]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
** [http://www.uniprot.org/uniprot/O54031 O54031]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=(s)-methylmalonyl-coa decarboxylase}}
 
−
{{#set: ec-number=ec-4.1.1.41}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-1104

  • direction:
    • left-to-right
  • common-name:
    • caffeate 3-o-methyltransferase
    • caffeate o-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2181, free phenylpropanoid acid biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7498, phenylpropanoids methylation (ice plant):
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-7186, superpathway of scopolin and esculin biosynthesis:
    • 2 reactions found over 12 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis:
    • 9 reactions found over 20 reactions in the full pathway

Reconstruction information

External links





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