Difference between revisions of "RXN-1104"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == * direction: ** l...")
(Created page with "Category:reaction == Reaction RXN-1104 == * direction: ** left-to-right * common-name: ** caffeate 3-o-methyltransferase ** caffeate o-methyltransferase * ec-number: ** [h...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] ==
+
== Reaction RXN-1104 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** succinate:quinone oxidoreductase
+
** caffeate 3-o-methyltransferase
 +
** caffeate o-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/2.1.1.68 ec-2.1.1.68]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[Ubiquinols]][c]
+
* 1 [[CPD-676]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07699]]
−
* Gene: [[SJ18770]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19480]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02694]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02118]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ09797]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01012]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17434]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17484]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
+
* [[PWY-2181]], free phenylpropanoid acid biosynthesis:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
+
* [[PWY-7498]], phenylpropanoids methylation (ice plant):
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis:
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
+
* [[PWY-1121]], suberin monomers biosynthesis:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''9''' reactions found over '''20''' reactions in the full pathway
−
* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1329 PWY0-1329]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1353 PWY0-1353]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR108123
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13714 13714]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20226 20226]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35720 P35720]
+
** [http://www.uniprot.org/uniprot/Q41086 Q41086]
−
** [http://www.uniprot.org/uniprot/Q26266 Q26266]
+
** [http://www.uniprot.org/uniprot/P28002 P28002]
−
** [http://www.uniprot.org/uniprot/P21913 P21913]
+
** [http://www.uniprot.org/uniprot/Q00763 Q00763]
−
** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
 
−
** [http://www.uniprot.org/uniprot/P21911 P21911]
 
−
** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
 
−
** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
 
−
** [http://www.uniprot.org/uniprot/P21912 P21912]
 
−
** [http://www.uniprot.org/uniprot/P31040 P31040]
 
−
** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
 
−
** [http://www.uniprot.org/uniprot/P21801 P21801]
 
−
** [http://www.uniprot.org/uniprot/P35721 P35721]
 
−
** [http://www.uniprot.org/uniprot/P32420 P32420]
 
−
** [http://www.uniprot.org/uniprot/Q00711 Q00711]
 
−
** [http://www.uniprot.org/uniprot/P47052 P47052]
 
−
** [http://www.uniprot.org/uniprot/P48932 P48932]
 
−
** [http://www.uniprot.org/uniprot/P48934 P48934]
 
−
** [http://www.uniprot.org/uniprot/P48935 P48935]
 
−
** [http://www.uniprot.org/uniprot/P48933 P48933]
 
−
** [http://www.uniprot.org/uniprot/P73723 P73723]
 
−
** [http://www.uniprot.org/uniprot/P80481 P80481]
 
−
** [http://www.uniprot.org/uniprot/P80482 P80482]
 
−
** [http://www.uniprot.org/uniprot/P80480 P80480]
 
−
** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
 
−
** [http://www.uniprot.org/uniprot/P80479 P80479]
 
−
** [http://www.uniprot.org/uniprot/P80478 P80478]
 
−
** [http://www.uniprot.org/uniprot/Q09508 Q09508]
 
−
** [http://www.uniprot.org/uniprot/Q59659 Q59659]
 
−
** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=succinate:quinone oxidoreductase}}
+
{{#set: common-name=caffeate 3-o-methyltransferase|caffeate o-methyltransferase}}
−
{{#set: ec-number=ec-1.3.5.1}}
+
{{#set: ec-number=ec-2.1.1.68}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-1104

  • direction:
    • left-to-right
  • common-name:
    • caffeate 3-o-methyltransferase
    • caffeate o-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2181, free phenylpropanoid acid biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7498, phenylpropanoids methylation (ice plant):
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-7186, superpathway of scopolin and esculin biosynthesis:
    • 2 reactions found over 12 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis:
    • 9 reactions found over 20 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-1104&oldid=140304"