Difference between revisions of "RXN-1104"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] == * direction: ** left-to-right * common-name: ** long-chain fatty acid-coa l...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == * direction: ** l...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** succinate:quinone oxidoreductase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[Ubiquinols]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ18770]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ19480]] |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02694]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02118]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ01012]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17484]] |
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1329 PWY0-1329] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1353 PWY0-1353] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13714 13714] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P35720 P35720] | ||
+ | ** [http://www.uniprot.org/uniprot/Q26266 Q26266] | ||
+ | ** [http://www.uniprot.org/uniprot/P21913 P21913] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2] | ||
+ | ** [http://www.uniprot.org/uniprot/P21911 P21911] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67] | ||
+ | ** [http://www.uniprot.org/uniprot/P21912 P21912] | ||
+ | ** [http://www.uniprot.org/uniprot/P31040 P31040] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3] | ||
+ | ** [http://www.uniprot.org/uniprot/P21801 P21801] | ||
+ | ** [http://www.uniprot.org/uniprot/P35721 P35721] | ||
+ | ** [http://www.uniprot.org/uniprot/P32420 P32420] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00711 Q00711] | ||
+ | ** [http://www.uniprot.org/uniprot/P47052 P47052] | ||
+ | ** [http://www.uniprot.org/uniprot/P48932 P48932] | ||
+ | ** [http://www.uniprot.org/uniprot/P48934 P48934] | ||
+ | ** [http://www.uniprot.org/uniprot/P48935 P48935] | ||
+ | ** [http://www.uniprot.org/uniprot/P48933 P48933] | ||
+ | ** [http://www.uniprot.org/uniprot/P73723 P73723] | ||
+ | ** [http://www.uniprot.org/uniprot/P80481 P80481] | ||
+ | ** [http://www.uniprot.org/uniprot/P80482 P80482] | ||
+ | ** [http://www.uniprot.org/uniprot/P80480 P80480] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T584 Q9T584] | ||
+ | ** [http://www.uniprot.org/uniprot/P80479 P80479] | ||
+ | ** [http://www.uniprot.org/uniprot/P80478 P80478] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09508 Q09508] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59659 Q59659] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=succinate:quinone oxidoreductase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-1.3.5.1}} |
{{#set: nb gene associated=6}} | {{#set: nb gene associated=6}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=annotation|orthology}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:30, 27 August 2019
Contents
Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
- direction:
- left-to-right
- common-name:
- succinate:quinone oxidoreductase
- ec-number:
Reaction formula
- 1 SUC[c] + 1 Ubiquinones[c] => 1 FUM[c] + 1 Ubiquinols[c]
Gene(s) associated with this reaction
- Gene: SJ18770
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ19480
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ02694
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ02118
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ01012
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17484
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-3781, aerobic respiration I (cytochrome c): PWY-3781
- 4 reactions found over 4 reactions in the full pathway
- PWY-7279, aerobic respiration II (cytochrome c) (yeast): PWY-7279
- 4 reactions found over 4 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-4302, aerobic respiration III (alternative oxidase pathway): PWY-4302
- 3 reactions found over 3 reactions in the full pathway
- PWY0-1329, succinate to cytochrome bo oxidase electron transfer: PWY0-1329
- 1 reactions found over 2 reactions in the full pathway
- PWY0-1353, succinate to cytochrome bd oxidase electron transfer: PWY0-1353
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- PIR: