Difference between revisions of "RXN-11049"

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(Created page with "Category:reaction == Reaction THYMIDYLATESYN-RXN == * direction: ** left-to-right * common-name: ** thymidylate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1...")
(Created page with "Category:reaction == Reaction 5.3.4.1-RXN == * direction: ** reversible * common-name: ** protein disulfide isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.4.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THYMIDYLATESYN-RXN ==
+
== Reaction 5.3.4.1-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** thymidylate synthase
+
** protein disulfide isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45]
+
** [http://enzyme.expasy.org/EC/5.3.4.1 ec-5.3.4.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
+
* 1 [[Proteins-with-incorrect-disulfides]][c] '''<=>''' 1 [[Proteins-with-correct-disulfides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19601]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17411]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11283]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17455]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02706]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09446]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08265]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13150]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09445]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16659]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08165]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07095]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13009]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06720]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16004]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* METANETX-RXN : MNXR115628
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12105 12105]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19368 P19368]
+
** [http://www.uniprot.org/uniprot/P13667 P13667]
−
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
+
** [http://www.uniprot.org/uniprot/P11598 P11598]
−
** [http://www.uniprot.org/uniprot/P47469 P47469]
+
** [http://www.uniprot.org/uniprot/P21195 P21195]
−
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
+
** [http://www.uniprot.org/uniprot/P0AEG4 P0AEG4]
−
** [http://www.uniprot.org/uniprot/P42326 P42326]
+
** [http://www.uniprot.org/uniprot/P29828 P29828]
−
** [http://www.uniprot.org/uniprot/O02604 O02604]
+
** [http://www.uniprot.org/uniprot/P32557 P32557]
−
** [http://www.uniprot.org/uniprot/P07382 P07382]
+
** [http://www.uniprot.org/uniprot/Q27780 Q27780]
−
** [http://www.uniprot.org/uniprot/P16126 P16126]
+
** [http://www.uniprot.org/uniprot/P31810 P31810]
−
** [http://www.uniprot.org/uniprot/P13922 P13922]
+
** [http://www.uniprot.org/uniprot/Q9PDE2 Q9PDE2]
−
** [http://www.uniprot.org/uniprot/P20712 P20712]
+
** [http://www.uniprot.org/uniprot/O27777 O27777]
−
** [http://www.uniprot.org/uniprot/P11044 P11044]
+
** [http://www.uniprot.org/uniprot/Q9JSN7 Q9JSN7]
−
** [http://www.uniprot.org/uniprot/P45350 P45350]
+
** [http://www.uniprot.org/uniprot/P45111 P45111]
−
** [http://www.uniprot.org/uniprot/P45352 P45352]
+
** [http://www.uniprot.org/uniprot/P0AEG6 P0AEG6]
−
** [http://www.uniprot.org/uniprot/P51820 P51820]
+
** [http://www.uniprot.org/uniprot/O68904 O68904]
−
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
+
** [http://www.uniprot.org/uniprot/Q9PCE7 Q9PCE7]
−
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
+
** [http://www.uniprot.org/uniprot/Q9PDF5 Q9PDF5]
−
** [http://www.uniprot.org/uniprot/P09249 P09249]
+
** [http://www.uniprot.org/uniprot/Q9JSY5 Q9JSY5]
−
** [http://www.uniprot.org/uniprot/P12462 P12462]
+
** [http://www.uniprot.org/uniprot/Q9KPF0 Q9KPF0]
−
** [http://www.uniprot.org/uniprot/P07606 P07606]
+
** [http://www.uniprot.org/uniprot/P95460 P95460]
−
** [http://www.uniprot.org/uniprot/P00471 P00471]
+
** [http://www.uniprot.org/uniprot/P05307 P05307]
−
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
+
** [http://www.uniprot.org/uniprot/P17967 P17967]
−
** [http://www.uniprot.org/uniprot/P00469 P00469]
+
** [http://www.uniprot.org/uniprot/P09102 P09102]
−
** [http://www.uniprot.org/uniprot/O81395 O81395]
+
** [http://www.uniprot.org/uniprot/P07237 P07237]
−
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
+
** [http://www.uniprot.org/uniprot/P08003 P08003]
−
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
+
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
−
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
+
** [http://www.uniprot.org/uniprot/P04785 P04785]
−
** [http://www.uniprot.org/uniprot/P06785 P06785]
+
** [http://www.uniprot.org/uniprot/P55059 P55059]
−
** [http://www.uniprot.org/uniprot/P04818 P04818]
+
** [http://www.uniprot.org/uniprot/Q27553 Q27553]
−
** [http://www.uniprot.org/uniprot/P07607 P07607]
+
** [http://www.uniprot.org/uniprot/P30101 P30101]
−
** [http://www.uniprot.org/uniprot/P13100 P13100]
+
** [http://www.uniprot.org/uniprot/Q7M1Q4 Q7M1Q4]
 +
** [http://www.uniprot.org/uniprot/Q04815 Q04815]
 +
** [http://www.uniprot.org/uniprot/P39691 P39691]
 +
** [http://www.uniprot.org/uniprot/P34329 P34329]
 +
** [http://www.uniprot.org/uniprot/Q12730 Q12730]
 +
** [http://www.uniprot.org/uniprot/Q43116 Q43116]
 +
** [http://www.uniprot.org/uniprot/Q9TWZ1 Q9TWZ1]
 +
** [http://www.uniprot.org/uniprot/P52588 P52588]
 +
** [http://www.uniprot.org/uniprot/Q17967 Q17967]
 +
** [http://www.uniprot.org/uniprot/P52234 P52234]
 +
** [http://www.uniprot.org/uniprot/O22263 O22263]
 +
** [http://www.uniprot.org/uniprot/P93358 P93358]
 +
** [http://www.uniprot.org/uniprot/P80284 P80284]
 +
** [http://www.uniprot.org/uniprot/P52589 P52589]
 +
** [http://www.uniprot.org/uniprot/O48949 O48949]
 +
** [http://www.uniprot.org/uniprot/P38661 P38661]
 +
** [http://www.uniprot.org/uniprot/O13704 O13704]
 +
** [http://www.uniprot.org/uniprot/O13811 O13811]
 +
** [http://www.uniprot.org/uniprot/Q10057 Q10057]
 +
** [http://www.uniprot.org/uniprot/Q92249 Q92249]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=thymidylate synthase}}
+
{{#set: common-name=protein disulfide isomerase}}
−
{{#set: ec-number=ec-2.1.1.45}}
+
{{#set: ec-number=ec-5.3.4.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=14}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction 5.3.4.1-RXN

  • direction:
    • reversible
  • common-name:
    • protein disulfide isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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