Difference between revisions of "RXN-11057"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-11693 == * direction: ** left-to-right * common-name: ** separase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.22.49 ec-3.4.22.49] ==...") |
(Created page with "Category:reaction == Reaction PEPDEPHOS-RXN == * direction: ** left-to-right * common-name: ** pyruvate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.40 ec-2.7...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction PEPDEPHOS-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** pyruvate kinase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.1.40 ec-2.7.1.40] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ADP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ17585]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ18193]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ18192]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ13451]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[P122-PWY]], heterolactic fermentation: | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-1042]], glycolysis IV (plant cytosol): | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7003]], glycerol degradation to butanol: | ||
+ | ** '''8''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): | ||
+ | ** '''8''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): | ||
+ | ** '''7''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6901]], superpathway of glucose and xylose degradation: | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M034 Q7M034] | ||
+ | ** [http://www.uniprot.org/uniprot/P11979 P11979] | ||
+ | ** [http://www.uniprot.org/uniprot/P11980 P11980] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07637 Q07637] | ||
+ | ** [http://www.uniprot.org/uniprot/P34038 P34038] | ||
+ | ** [http://www.uniprot.org/uniprot/P43924 P43924] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57572 Q57572] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AD61 P0AD61] | ||
+ | ** [http://www.uniprot.org/uniprot/P19680 P19680] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0] | ||
+ | ** [http://www.uniprot.org/uniprot/P80885 P80885] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8] | ||
+ | ** [http://www.uniprot.org/uniprot/P47458 P47458] | ||
+ | ** [http://www.uniprot.org/uniprot/Q46078 Q46078] | ||
+ | ** [http://www.uniprot.org/uniprot/P30614 P30614] | ||
+ | ** [http://www.uniprot.org/uniprot/P22200 P22200] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27788 Q27788] | ||
+ | ** [http://www.uniprot.org/uniprot/P51182 P51182] | ||
+ | ** [http://www.uniprot.org/uniprot/P51181 P51181] | ||
+ | ** [http://www.uniprot.org/uniprot/P31865 P31865] | ||
+ | ** [http://www.uniprot.org/uniprot/P00549 P00549] | ||
+ | ** [http://www.uniprot.org/uniprot/P00548 P00548] | ||
+ | ** [http://www.uniprot.org/uniprot/P30613 P30613] | ||
+ | ** [http://www.uniprot.org/uniprot/O75758 O75758] | ||
+ | ** [http://www.uniprot.org/uniprot/P12928 P12928] | ||
+ | ** [http://www.uniprot.org/uniprot/O30853 O30853] | ||
+ | ** [http://www.uniprot.org/uniprot/P30615 P30615] | ||
+ | ** [http://www.uniprot.org/uniprot/P30616 P30616] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02499 Q02499] | ||
+ | ** [http://www.uniprot.org/uniprot/P22360 P22360] | ||
+ | ** [http://www.uniprot.org/uniprot/P21599 P21599] | ||
+ | ** [http://www.uniprot.org/uniprot/P14618 P14618] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42954 Q42954] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40545 Q40545] | ||
+ | ** [http://www.uniprot.org/uniprot/P52480 P52480] | ||
+ | ** [http://www.uniprot.org/uniprot/P52489 P52489] | ||
+ | ** [http://www.uniprot.org/uniprot/P78031 P78031] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55863 Q55863] | ||
+ | ** [http://www.uniprot.org/uniprot/P73534 P73534] | ||
+ | ** [http://www.uniprot.org/uniprot/O65595 O65595] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42806 Q42806] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43117 Q43117] | ||
+ | ** [http://www.uniprot.org/uniprot/Q10208 Q10208] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=pyruvate kinase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.7.1.40}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=17}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:14, 14 January 2021
Contents
Reaction PEPDEPHOS-RXN
- direction:
- left-to-right
- common-name:
- pyruvate kinase
- ec-number:
Reaction formula
- 1 ADP[c] + 1 PHOSPHO-ENOL-PYRUVATE[c] + 1 PROTON[c] => 1 ATP[c] + 1 PYRUVATE[c]
Gene(s) associated with this reaction
- Gene: SJ17585
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ18193
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ18192
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ13451
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- P122-PWY, heterolactic fermentation:
- 16 reactions found over 18 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate):
- 10 reactions found over 11 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt:
- 12 reactions found over 15 reactions in the full pathway
- PWY-1042, glycolysis IV (plant cytosol):
- 9 reactions found over 10 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus):
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
- 10 reactions found over 11 reactions in the full pathway
- PWY-7003, glycerol degradation to butanol:
- 8 reactions found over 6 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation:
- 11 reactions found over 16 reactions in the full pathway
- PWY-6886, 1-butanol autotrophic biosynthesis (engineered):
- 8 reactions found over 5 reactions in the full pathway
- PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
- 7 reactions found over 4 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 10 reactions found over 10 reactions in the full pathway
- PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
- 6 reactions found over 9 reactions in the full pathway
- PWY-7383, anaerobic energy metabolism (invertebrates, cytosol):
- 4 reactions found over 7 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation:
- 10 reactions found over 8 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
- 10 reactions found over 13 reactions in the full pathway
- NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
- 4 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- Q7M034
- P11979
- P11980
- Q07637
- P34038
- P43924
- Q57572
- P0AD61
- P19680
- Q9PIB0
- P80885
- Q9UYU6
- Q9JWX8
- P47458
- Q46078
- P30614
- P22200
- Q27788
- P51182
- P51181
- P31865
- P00549
- P00548
- P30613
- O75758
- P12928
- O30853
- P30615
- P30616
- Q02499
- P22360
- P21599
- P14618
- Q42954
- Q40545
- P52480
- P52489
- P78031
- Q55863
- P73534
- O65595
- Q42806
- Q43117
- Q10208