Difference between revisions of "RXN-11244"

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(Created page with "Category:reaction == Reaction ATCY == * direction: ** left-to-right * common-name: ** atp:cytidine 5'-phosphotransferase == Reaction formula == * 1.0 ATP[c] '''+''' 1....")
(Created page with "Category:reaction == Reaction RXN0-2044 == * direction: ** reversible * common-name: ** 3-hydroxyadipyl-coa dehydrogenase ** 3-hydroxyacyl-coa dehydrogenase * ec-number: *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ATCY ==
+
== Reaction RXN0-2044 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** atp:cytidine 5'-phosphotransferase
+
** 3-hydroxyadipyl-coa dehydrogenase
 +
** 3-hydroxyacyl-coa dehydrogenase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ATP]][c] '''+''' 1.0 [[CYTIDINE]][c] '''=>''' 1.0 [[ADP]][c] '''+''' 1.0 [[CMP]][c] '''+''' 1.0 [[PROTON]][c]
+
* 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETO-ADIPYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02034]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ01444]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15690]]
+
* Gene: [[SJ06127]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-321]], phenylacetate degradation I (aerobic):
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic):
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=atp:cytidine 5'-phosphotransferase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34854 34854]
−
{{#set: nb gene associated=2}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941]
−
{{#set: reconstruction category=orthology}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase|3-hydroxyadipyl-coa dehydrogenase}}
 +
{{#set: ec-number=ec-1.1.1.35}}
 +
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction RXN0-2044

  • direction:
    • reversible
  • common-name:
    • 3-hydroxyadipyl-coa dehydrogenase
    • 3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-321, phenylacetate degradation I (aerobic):
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-1361, benzoyl-CoA degradation I (aerobic):
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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