Difference between revisions of "RXN-11244"

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(Created page with "Category:reaction == Reaction RXN0-2044 == * direction: ** reversible * common-name: ** 3-hydroxyadipyl-coa dehydrogenase ** 3-hydroxyacyl-coa dehydrogenase * ec-number: *...")
(Created page with "Category:reaction == Reaction 4-COUMARATE--COA-LIGASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12] == Reaction f...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-2044 ==
+
== Reaction 4-COUMARATE--COA-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** 3-hydroxyadipyl-coa dehydrogenase
 
−
** 3-hydroxyacyl-coa dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETO-ADIPYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03066]]
−
* Gene: [[SJ01444]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ16901]]
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06127]]
+
== Pathway(s)  ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-7397]], naringenin biosynthesis (engineered):
−
* Gene: [[SJ16180]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-6320]], phaselate biosynthesis:
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* Gene: [[SJ21390]]
+
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
−
** Category: [[annotation]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
−
* Gene: [[SJ03584]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-361]], phenylpropanoid biosynthesis:
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''7''' reactions found over '''15''' reactions in the full pathway
−
* Gene: [[SJ17348]]
+
* [[PWY-5135]], xanthohumol biosynthesis:
−
** Category: [[annotation]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-7398]], coumarins biosynthesis (engineered):
−
* Gene: [[SJ16470]]
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-7046]], 4-coumarate degradation (anaerobic):
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7897]], flavonoid di-C-glucosylation:
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6982]], umbelliferone biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[PWY0-321]], phenylacetate degradation I (aerobic):
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic):
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR94998
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34854 34854]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19642 19642]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase|3-hydroxyadipyl-coa dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P31684 P31684]
−
{{#set: ec-number=ec-1.1.1.35}}
+
** [http://www.uniprot.org/uniprot/P31685 P31685]
−
{{#set: nb gene associated=8}}
+
** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/P17814 P17814]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/P31687 P31687]
 +
** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
 +
** [http://www.uniprot.org/uniprot/P14912 P14912]
 +
** [http://www.uniprot.org/uniprot/P14913 P14913]
 +
** [http://www.uniprot.org/uniprot/P31686 P31686]
 +
** [http://www.uniprot.org/uniprot/Q42524 Q42524]
 +
** [http://www.uniprot.org/uniprot/Q42943 Q42943]
 +
** [http://www.uniprot.org/uniprot/Q42982 Q42982]
 +
** [http://www.uniprot.org/uniprot/P93360 P93360]
 +
** [http://www.uniprot.org/uniprot/P93361 P93361]
 +
** [http://www.uniprot.org/uniprot/O24146 O24146]
 +
** [http://www.uniprot.org/uniprot/O48868 O48868]
 +
** [http://www.uniprot.org/uniprot/O48869 O48869]
 +
** [http://www.uniprot.org/uniprot/O81139 O81139]
 +
** [http://www.uniprot.org/uniprot/O81140 O81140]
 +
** [http://www.uniprot.org/uniprot/P41636 P41636]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: ec-number=ec-6.2.1.12}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=12}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 08:33, 15 March 2021

Reaction 4-COUMARATE--COA-LIGASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7397, naringenin biosynthesis (engineered):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6320, phaselate biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6435, 4-hydroxybenzoate biosynthesis III (plants):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-361, phenylpropanoid biosynthesis:
    • 7 reactions found over 15 reactions in the full pathway
  • PWY-5135, xanthohumol biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7398, coumarins biosynthesis (engineered):
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-7046, 4-coumarate degradation (anaerobic):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7897, flavonoid di-C-glucosylation:
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6920, 6-gingerol analog biosynthesis (engineered):
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6982, umbelliferone biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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