Difference between revisions of "RXN-113"

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(Created page with "Category:reaction == Reaction AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan decarboxylase * ec-number: ** [http://e...")
(Created page with "Category:reaction == Reaction RXN-16415 == * direction: ** left-to-right * common-name: ** very-long-chain fatty-acyl-coa synthetase ** long-chain fatty acid-coa ligase *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN ==
+
== Reaction RXN-16415 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tryptophan decarboxylase
+
** very-long-chain fatty-acyl-coa synthetase
 +
** long-chain fatty acid-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.q ec-4.1.1.q]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TRYPTAMINE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Very-long-chain-fatty-acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[VERY-LONG-CHAIN-FATTY-ACYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11952]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08691]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03650]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13972]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3181]], L-tryptophan degradation VI (via tryptamine):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-581]], indole-3-acetate biosynthesis II:
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5473]], hydroxycinnamic acid serotonin amides biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5877]], beta-carboline biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6326]], camptothecin biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6307]], L-tryptophan degradation X (mammalian, via tryptamine):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7936]], psilocybin biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5290]], secologanin and strictosidine biosynthesis:
 
−
** '''2''' reactions found over '''17''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30340 30340]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00685 R00685]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P27718 P27718]
 
−
** [http://www.uniprot.org/uniprot/P05031 P05031]
 
−
** [http://www.uniprot.org/uniprot/P20711 P20711]
 
−
** [http://www.uniprot.org/uniprot/P17770 P17770]
 
−
** [http://www.uniprot.org/uniprot/P14173 P14173]
 
−
** [http://www.uniprot.org/uniprot/P22781 P22781]
 
−
** [http://www.uniprot.org/uniprot/P54770 P54770]
 
−
** [http://www.uniprot.org/uniprot/O82414 O82414]
 
−
** [http://www.uniprot.org/uniprot/P54771 P54771]
 
−
** [http://www.uniprot.org/uniprot/P34751 P34751]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan decarboxylase}}
+
{{#set: common-name=very-long-chain fatty-acyl-coa synthetase|long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-4.1.1.q}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:20, 15 January 2021

Reaction RXN-16415

  • direction:
    • left-to-right
  • common-name:
    • very-long-chain fatty-acyl-coa synthetase
    • long-chain fatty acid-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-113&oldid=113970"