Difference between revisions of "RXN-113"

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(Created page with "Category:reaction == Reaction RXN-16415 == * direction: ** left-to-right * common-name: ** very-long-chain fatty-acyl-coa synthetase ** long-chain fatty acid-coa ligase *...")
(Created page with "Category:reaction == Reaction RXN-113 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11] == Reaction formula == * 1 2-KETO...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16415 ==
+
== Reaction RXN-113 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** very-long-chain fatty-acyl-coa synthetase
 
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Very-long-chain-fatty-acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[VERY-LONG-CHAIN-FATTY-ACYL-COA]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-140]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-236]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14675]]
−
* Gene: [[SJ08691]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03650]]
+
* Gene: [[SJ14672]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08692]]
+
* Gene: [[SJ08018]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-102]], gibberellin inactivation I (2&beta;-hydroxylation):
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR108443
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03809 R03809]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=very-long-chain fatty-acyl-coa synthetase|long-chain fatty acid-coa ligase}}
+
{{#set: ec-number=ec-1.14.11}}
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-113

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-102, gibberellin inactivation I (2β-hydroxylation):
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108443
  • LIGAND-RXN:





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