Difference between revisions of "RXN-113"
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(Created page with "Category:reaction == Reaction RXN-12642 == * direction: ** reversible * common-name: ** 3-ketodihydrosphinganine (c20) reductase * ec-number: ** [http://enzyme.expasy.org/...") |
(Created page with "Category:reaction == Reaction THREONINE-ALDOLASE-RXN == * direction: ** left-to-right * common-name: ** threonine aldolase * ec-number: ** [http://enzyme.expasy.org/EC/4.1...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction THREONINE-ALDOLASE-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** threonine aldolase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/1.1.1. | + | ** [http://enzyme.expasy.org/EC/4.1.2.48 ec-4.1.2.48] |
| + | ** [http://enzyme.expasy.org/EC/4.1.2.5 ec-4.1.2.5] | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[THR]][c] '''=>''' 1 [[ACETALD]][c] '''+''' 1 [[GLY]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ12304]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ06446]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-5436]], L-threonine degradation IV: | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[GLYSYN-THR-PWY]], glycine biosynthesis IV: | ||
| + | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19626 19626] |
| − | {{#set: ec-number=ec-1.1. | + | * LIGAND-RXN: |
| − | {{#set: nb gene associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00751 R00751] |
| − | {{#set: nb pathway associated= | + | {{#set: direction=left-to-right}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: common-name=threonine aldolase}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: ec-number=ec-4.1.2.48|ec-4.1.2.5}} |
| + | {{#set: nb gene associated=2}} | ||
| + | {{#set: nb pathway associated=2}} | ||
| + | {{#set: reconstruction category=annotation|orthology}} | ||
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:00, 5 January 2021
Contents
Reaction THREONINE-ALDOLASE-RXN
- direction:
- left-to-right
- common-name:
- threonine aldolase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ12304
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06446
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5436, L-threonine degradation IV:
- 1 reactions found over 2 reactions in the full pathway
- GLYSYN-THR-PWY, glycine biosynthesis IV:
- 1 reactions found over 1 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
