Difference between revisions of "RXN-11322"

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(Created page with "Category:reaction == Reaction METHYLACETOACETYLCOATHIOL-RXN == * direction: ** reversible * common-name: ** 3-oxoacyl coa thiolase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-11322 == * direction: ** left-to-right * common-name: ** pyridoxal 5'-phosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.3...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLACETOACETYLCOATHIOL-RXN ==
+
== Reaction RXN-11322 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxoacyl coa thiolase
+
** pyridoxal 5'-phosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.9 ec-2.3.1.9]
+
** [http://enzyme.expasy.org/EC/4.3.3.6 ec-4.3.3.6]
 +
* synonymous:
 +
** glutamine amidotransferase subunit pdxt
 +
** pyridoxal 5'-phosphate synthase subunit pdxs
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-METHYL-ACETO-ACETYL-COA]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[PROPIONYL-COA]][c]
+
* 1 [[CPD-15895]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[Pi]][c] '''+''' 3 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09371]]
+
* Gene: [[SJ10267]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ19163]]
−
* Gene: [[SJ21818]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14898]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ILEUDEG-PWY]], L-isoleucine degradation I:
+
* [[PWY-6466]], pyridoxal 5'-phosphate biosynthesis II:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5109]], fermentation to 2-methylbutanoate:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR140225
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30721 30721]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31508 31508]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00927 R00927]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07456 R07456]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxoacyl coa thiolase}}
+
{{#set: common-name=pyridoxal 5'-phosphate synthase}}
−
{{#set: ec-number=ec-2.3.1.9}}
+
{{#set: ec-number=ec-4.3.3.6}}
−
{{#set: nb gene associated=3}}
+
{{#set: synonymous=glutamine amidotransferase subunit pdxt|pyridoxal 5'-phosphate synthase subunit pdxs}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-11322

  • direction:
    • left-to-right
  • common-name:
    • pyridoxal 5'-phosphate synthase
  • ec-number:
  • synonymous:
    • glutamine amidotransferase subunit pdxt
    • pyridoxal 5'-phosphate synthase subunit pdxs

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6466, pyridoxal 5'-phosphate biosynthesis II:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR140225
  • RHEA:
  • LIGAND-RXN:






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