Difference between revisions of "RXN-11474"

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(Created page with "Category:reaction == Reaction RXN-8660 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
(Created page with "Category:reaction == Reaction RXN-8583 == * direction: ** left-to-right * common-name: ** benzaldehyde dehydrogenase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-8660 ==
+
== Reaction RXN-8583 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** [histone-h3]-lysine-36 demethylase
+
** benzaldehyde dehydrogenase (nad+)
** histone demethylase activity (h3-k36 specific)
+
* ec-number:
* synonymous:
+
** [http://enzyme.expasy.org/EC/1.2.1.28 ec-1.2.1.28]
** h3-k36-specific demethylase
 
** jmjc domain-containing histone demethylase 1a
 
** histone demethylase
 
** histone-lysine (h3-k36) demethylase
 
** jhdm1a
 
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[CPD-8774]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-8775]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ05371]]
+
* Gene: [[SJ06456]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ13421]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ18735]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ19354]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ00708]]
+
* Gene: [[SJ06470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ19102]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5428]], 1,3-dimethylbenzene degradation to 3-methylbenzoate:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}}
+
{{#set: common-name=benzaldehyde dehydrogenase (nad+)}}
{{#set: synonymous=histone demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jmjc domain-containing histone demethylase 1a|h3-k36-specific demethylase|histone-lysine (h3-k36) demethylase|jhdm1a}}
+
{{#set: ec-number=ec-1.2.1.28}}
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=2}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:07, 5 January 2021

Reaction RXN-8583

  • direction:
    • left-to-right
  • common-name:
    • benzaldehyde dehydrogenase (nad+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5428, 1,3-dimethylbenzene degradation to 3-methylbenzoate:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links