Difference between revisions of "RXN-11476"

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(Created page with "Category:reaction == Reaction ExchangeSeed-AMMONIA == * direction: ** reversible == Reaction formula == * 1.0 AMMONIA[C-BOUNDARY] '''<=>''' 1.0 AMMONIA[e] == Gene(...")
(Created page with "Category:reaction == Reaction GTPPYPHOSKIN-RXN == * direction: ** left-to-right * common-name: ** gtp pyrophosphokinase ** gtp diphosphokinase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-AMMONIA ==
+
== Reaction GTPPYPHOSKIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** gtp pyrophosphokinase
 +
** gtp diphosphokinase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.7.6.5 ec-2.7.6.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[AMMONIA]][C-BOUNDARY] '''<=>''' 1.0 [[AMMONIA]][e]
+
* 1 [[ATP]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GDP-TP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ10100]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07200]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13961]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PPGPPMET-PWY]], ppGpp metabolism:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22089 22089]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=manual}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00429 R00429]
−
{{#set: reconstruction tool=curation}}
+
* UNIPROT:
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
** [http://www.uniprot.org/uniprot/Q9CJ94 Q9CJ94]
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/P44644 P44644]
 +
** [http://www.uniprot.org/uniprot/Q9PDR3 Q9PDR3]
 +
** [http://www.uniprot.org/uniprot/P0AG20 P0AG20]
 +
** [http://www.uniprot.org/uniprot/P52560 P52560]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=gtp pyrophosphokinase|gtp diphosphokinase}}
 +
{{#set: ec-number=ec-2.7.6.5}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 11:21, 15 January 2021

Reaction GTPPYPHOSKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • gtp pyrophosphokinase
    • gtp diphosphokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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