Difference between revisions of "RXN-11586"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYLYLSULFKIN-RXN ADENYLYLSULFKIN-RXN] == * direction: ** reversible * common-name: ** adenylylsu...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * direction: ** left-to-right * common-name: ** biotin synthase * ec-nu...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYLYLSULFKIN-RXN ADENYLYLSULFKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** adenylylsulfate kinase
+
** biotin synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.25 ec-2.7.1.25]
+
** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[APS]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PAPS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09890]]
+
* Gene: [[SJ16348]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5340]], sulfate activation for sulfonation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5340 PWY-5340]
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24155 24155]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00509 R00509]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A6J1 P0A6J1]
+
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
−
** [http://www.uniprot.org/uniprot/Q10600 Q10600]
+
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
−
** [http://www.uniprot.org/uniprot/O67174 O67174]
+
** [http://www.uniprot.org/uniprot/P53557 P53557]
−
** [http://www.uniprot.org/uniprot/Q9PMP2 Q9PMP2]
+
** [http://www.uniprot.org/uniprot/O67104 O67104]
−
** [http://www.uniprot.org/uniprot/P28604 P28604]
+
** [http://www.uniprot.org/uniprot/P44987 P44987]
−
** [http://www.uniprot.org/uniprot/Q27128 Q27128]
+
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
−
** [http://www.uniprot.org/uniprot/O43252 O43252]
+
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
−
** [http://www.uniprot.org/uniprot/Q02196 Q02196]
+
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
−
** [http://www.uniprot.org/uniprot/P29811 P29811]
+
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
−
** [http://www.uniprot.org/uniprot/Q43295 Q43295]
+
** [http://www.uniprot.org/uniprot/P46396 P46396]
−
** [http://www.uniprot.org/uniprot/P72940 P72940]
+
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
−
** [http://www.uniprot.org/uniprot/O49196 O49196]
+
** [http://www.uniprot.org/uniprot/P19206 P19206]
−
** [http://www.uniprot.org/uniprot/O49204 O49204]
+
** [http://www.uniprot.org/uniprot/P32451 P32451]
−
** [http://www.uniprot.org/uniprot/P13442 P13442]
+
** [http://www.uniprot.org/uniprot/P54967 P54967]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P46715 P46715]
−
{{#set: common-name=adenylylsulfate kinase}}
+
** [http://www.uniprot.org/uniprot/P73538 P73538]
−
{{#set: ec-number=ec-2.7.1.25}}
+
** [http://www.uniprot.org/uniprot/P12996 P12996]
 +
** [http://www.uniprot.org/uniprot/O59778 O59778]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=biotin synthase}}
 +
{{#set: ec-number=ec-2.8.1.6}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction 2.8.1.6-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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