Difference between revisions of "RXN-11633"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction FORMATETHFLIG-RXN == * direction: ** reversible * common-name: ** formate:tetrahydropteroylpolyglutamate ligase ** formate-tetrahydrofolate l...")
(Created page with "Category:reaction == Reaction RXN-11633 == * direction: ** left-to-right * common-name: ** 16s rrna m62a1518,m62a1519 dimethyltransferase * ec-number: ** [http://enzyme.ex...")
 
(3 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FORMATETHFLIG-RXN ==
+
== Reaction RXN-11633 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** formate:tetrahydropteroylpolyglutamate ligase
+
** 16s rrna m62a1518,m62a1519 dimethyltransferase
−
** formate-tetrahydrofolate ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.3 ec-6.3.4.3]
+
** [http://enzyme.expasy.org/EC/2.1.1.182 ec-2.1.1.182]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[16S-rRNA-adenine1518-adenine1519]][c] '''+''' 4 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[16S-rRNA-N6-dimethyladenine1518-1519]][c] '''+''' 4 [[ADENOSYL-HOMO-CYS]][c] '''+''' 4 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12991]]
+
* Gene: [[SJ05484]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07523]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2161]], folate polyglutamylation:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117057
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20224 20224]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19610 19610]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
+
{{#set: common-name=16s rrna m62a1518,m62a1519 dimethyltransferase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-2.1.1.182}}
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P13419 P13419]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P21164 P21164]
 
−
** [http://www.uniprot.org/uniprot/P28723 P28723]
 
−
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
 
−
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
 
−
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
 
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=formate-tetrahydrofolate ligase|formate:tetrahydropteroylpolyglutamate ligase}}
 
−
{{#set: ec-number=ec-6.3.4.3}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-11633

  • direction:
    • left-to-right
  • common-name:
    • 16s rrna m62a1518,m62a1519 dimethyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117057
  • RHEA:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-11633&oldid=140325"