Difference between revisions of "RXN-11633"

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(Created page with "Category:reaction == Reaction RXN-8759 == * direction: ** left-to-right * common-name: ** sirohydrochlorin cobaltochelatase * ec-number: ** [http://enzyme.expasy.org/EC/4....")
(Created page with "Category:reaction == Reaction RXN0-949 == * direction: ** left-to-right * common-name: ** lipoyl synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.8 ec-2.8.1.8]...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8759 ==
+
== Reaction RXN0-949 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** sirohydrochlorin cobaltochelatase
+
** lipoyl synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.99.1.3 ec-4.99.1.3]
+
** [http://enzyme.expasy.org/EC/2.8.1.8 ec-2.8.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO+2]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c] '''=>''' 1 [[CPD-9039]][c] '''+''' 4 [[PROTON]][c]
+
* 1 [[Octanoylated-domains]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 2 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 2 [[CH33ADO]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19170]]
+
* Gene: [[SJ03663]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ04393]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-1275]], lipoate biosynthesis and incorporation II:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-501]], lipoate biosynthesis and incorporation I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26269 26269]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16586 16586]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07767 R07767]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=sirohydrochlorin cobaltochelatase}}
+
{{#set: common-name=lipoyl synthase}}
−
{{#set: ec-number=ec-4.99.1.3}}
+
{{#set: ec-number=ec-2.8.1.8}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:01, 5 January 2021

Reaction RXN0-949

  • direction:
    • left-to-right
  • common-name:
    • lipoyl synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1275, lipoate biosynthesis and incorporation II:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-501, lipoate biosynthesis and incorporation I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6987, lipoate biosynthesis and incorporation III (Bacillus):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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