Difference between revisions of "RXN-11667"

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(Created page with "Category:reaction == Reaction LYSINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** lysine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:reaction == Reaction RXN-11667 == * direction: ** reversible * common-name: ** (s)-3-hydroxybutanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LYSINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-11667 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** lysine-trna ligase
+
** (s)-3-hydroxybutanoyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.6 ec-6.1.1.6]
+
** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21008]]
+
* Gene: [[SJ03584]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12237]]
+
* Gene: [[SJ03913]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-5177]], glutaryl-CoA degradation:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[P3-PWY]], gallate degradation III (anaerobic):
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
 +
** '''6''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR97883
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20793 20793]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P41258 P41258]
+
{{#set: common-name=(s)-3-hydroxybutanoyl-coa dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P46861 P46861]
+
{{#set: ec-number=ec-4.2.1.150}}
−
** [http://www.uniprot.org/uniprot/P47382 P47382]
 
−
** [http://www.uniprot.org/uniprot/O57963 O57963]
 
−
** [http://www.uniprot.org/uniprot/O51603 O51603]
 
−
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
 
−
** [http://www.uniprot.org/uniprot/O83650 O83650]
 
−
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
 
−
** [http://www.uniprot.org/uniprot/P43825 P43825]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
 
−
** [http://www.uniprot.org/uniprot/O84786 O84786]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
 
−
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
 
−
** [http://www.uniprot.org/uniprot/P56126 P56126]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
 
−
** [http://www.uniprot.org/uniprot/O67258 O67258]
 
−
** [http://www.uniprot.org/uniprot/O84002 O84002]
 
−
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
 
−
** [http://www.uniprot.org/uniprot/P32048 P32048]
 
−
** [http://www.uniprot.org/uniprot/P37879 P37879]
 
−
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
 
−
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
 
−
** [http://www.uniprot.org/uniprot/P37477 P37477]
 
−
** [http://www.uniprot.org/uniprot/P75500 P75500]
 
−
** [http://www.uniprot.org/uniprot/P95970 P95970]
 
−
** [http://www.uniprot.org/uniprot/P73443 P73443]
 
−
** [http://www.uniprot.org/uniprot/P15180 P15180]
 
−
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
 
−
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
 
−
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
 
−
** [http://www.uniprot.org/uniprot/O74059 O74059]
 
−
** [http://www.uniprot.org/uniprot/O30522 O30522]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=lysine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.6}}
 
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=9}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-11667

  • direction:
    • reversible
  • common-name:
    • (s)-3-hydroxybutanoyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5177, glutaryl-CoA degradation:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered):
    • 9 reactions found over 11 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered):
    • 5 reactions found over 6 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I:
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic):
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 6 reactions found over 15 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97883
  • RHEA:
  • LIGAND-RXN:





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