Difference between revisions of "RXN-11734"

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(Created page with "Category:reaction == Reaction 3PGAREARR-RXN == * direction: ** reversible * common-name: ** phosphoglycerate mutase ** 2,3-bisphosphoglycerate-independent phosphoglycerate...")
(Created page with "Category:reaction == Reaction RXN-11734 == * direction: ** reversible * common-name: ** medium-chain acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3PGAREARR-RXN ==
+
== Reaction RXN-11734 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** phosphoglycerate mutase
+
** medium-chain acyl-coa dehydrogenase
−
** 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.2.12 ec-5.4.2.12]
+
** [http://enzyme.expasy.org/EC/1.3.8.7 ec-1.3.8.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
+
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[Medium-Chain-234-Saturated-acyl-CoAs]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[medium-Chain-Trans-23-Dehydroacyl-CoA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ15262]]
−
* Gene: [[SJ16156]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21024]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01345]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09590]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14984]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13678]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14916]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12497]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12299]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15529]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21685]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14704]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 
−
** '''7''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR117128
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15904 15904]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P30792 P30792]
 
−
** [http://www.uniprot.org/uniprot/P52832 P52832]
 
−
** [http://www.uniprot.org/uniprot/P44865 P44865]
 
−
** [http://www.uniprot.org/uniprot/P30798 P30798]
 
−
** [http://www.uniprot.org/uniprot/P62707 P62707]
 
−
** [http://www.uniprot.org/uniprot/P39773 P39773]
 
−
** [http://www.uniprot.org/uniprot/P47669 P47669]
 
−
** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
 
−
** [http://www.uniprot.org/uniprot/P56196 P56196]
 
−
** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
 
−
** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
 
−
** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
 
−
** [http://www.uniprot.org/uniprot/P00950 P00950]
 
−
** [http://www.uniprot.org/uniprot/P18669 P18669]
 
−
** [http://www.uniprot.org/uniprot/P15259 P15259]
 
−
** [http://www.uniprot.org/uniprot/P16290 P16290]
 
−
** [http://www.uniprot.org/uniprot/P35167 P35167]
 
−
** [http://www.uniprot.org/uniprot/P33158 P33158]
 
−
** [http://www.uniprot.org/uniprot/Q06464 Q06464]
 
−
** [http://www.uniprot.org/uniprot/P36623 P36623]
 
−
** [http://www.uniprot.org/uniprot/P35494 P35494]
 
−
** [http://www.uniprot.org/uniprot/P37689 P37689]
 
−
** [http://www.uniprot.org/uniprot/P35493 P35493]
 
−
** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
 
−
** [http://www.uniprot.org/uniprot/Q42908 Q42908]
 
−
** [http://www.uniprot.org/uniprot/Q12326 Q12326]
 
−
** [http://www.uniprot.org/uniprot/P53531 P53531]
 
−
** [http://www.uniprot.org/uniprot/P51379 P51379]
 
−
** [http://www.uniprot.org/uniprot/P75167 P75167]
 
−
** [http://www.uniprot.org/uniprot/P72649 P72649]
 
−
** [http://www.uniprot.org/uniprot/P74507 P74507]
 
−
** [http://www.uniprot.org/uniprot/Q49006 Q49006]
 
−
** [http://www.uniprot.org/uniprot/O24246 O24246]
 
−
** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=phosphoglycerate mutase|2,3-bisphosphoglycerate-independent phosphoglycerate mutase}}
+
{{#set: common-name=medium-chain acyl-coa dehydrogenase}}
−
{{#set: ec-number=ec-5.4.2.12}}
+
{{#set: ec-number=ec-1.3.8.7}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=14}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-11734

  • direction:
    • reversible
  • common-name:
    • medium-chain acyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117128





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