Difference between revisions of "RXN-11757"

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(Created page with "Category:reaction == Reaction ADENOSYLHOMOCYSTEINASE-RXN == * direction: ** reversible * common-name: ** s-adenosylhomocysteine hydrolase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-905 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENOSYLHOMOCYSTEINASE-RXN ==
+
== Reaction RXN-905 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** s-adenosylhomocysteine hydrolase
+
** 3-hydroxyacyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.3.1.1 ec-3.3.1.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[HOMO-CYS]][c]
+
* 1 [[CARBOXYMETHYL-HYDROXYPHENYLPROPCOA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[BENZOYLSUCCINYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07466]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ01444]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06127]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine):
+
* [[PWY-81]], toluene degradation to benzoyl-CoA (anaerobic):
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5041]], S-adenosyl-L-methionine cycle II:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21711 21711]
+
{{#set: ec-number=ec-1.1.1.35}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=8}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00192 R00192]
+
{{#set: nb pathway associated=1}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P10760 P10760]
 
−
** [http://www.uniprot.org/uniprot/P10819 P10819]
 
−
** [http://www.uniprot.org/uniprot/P23526 P23526]
 
−
** [http://www.uniprot.org/uniprot/P28183 P28183]
 
−
** [http://www.uniprot.org/uniprot/P50250 P50250]
 
−
** [http://www.uniprot.org/uniprot/P60176 P60176]
 
−
** [http://www.uniprot.org/uniprot/Q58783 Q58783]
 
−
** [http://www.uniprot.org/uniprot/O23255 O23255]
 
−
** [http://www.uniprot.org/uniprot/O27673 O27673]
 
−
** [http://www.uniprot.org/uniprot/O29376 O29376]
 
−
** [http://www.uniprot.org/uniprot/O28279 O28279]
 
−
** [http://www.uniprot.org/uniprot/P51893 P51893]
 
−
** [http://www.uniprot.org/uniprot/P50245 P50245]
 
−
** [http://www.uniprot.org/uniprot/P26799 P26799]
 
−
** [http://www.uniprot.org/uniprot/P35007 P35007]
 
−
** [http://www.uniprot.org/uniprot/P39954 P39954]
 
−
** [http://www.uniprot.org/uniprot/P50252 P50252]
 
−
** [http://www.uniprot.org/uniprot/P50249 P50249]
 
−
** [http://www.uniprot.org/uniprot/P74008 P74008]
 
−
** [http://www.uniprot.org/uniprot/P32112 P32112]
 
−
** [http://www.uniprot.org/uniprot/Q9UG84 Q9UG84]
 
−
** [http://www.uniprot.org/uniprot/Q01781 Q01781]
 
−
** [http://www.uniprot.org/uniprot/P27604 P27604]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=s-adenosylhomocysteine hydrolase}}
 
−
{{#set: ec-number=ec-3.3.1.1}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction RXN-905

  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-81, toluene degradation to benzoyl-CoA (anaerobic):
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-11757&oldid=103248"