Difference between revisions of "RXN-11832"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSEPHOSPHA-RXN TREHALOSEPHOSPHA-RXN] == * direction: ** left-to-right * common-name: ** treha...")
(Created page with "Category:reaction == Reaction RXN-11832 == * direction: ** left-to-right * common-name: ** cmp kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14] **...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSEPHOSPHA-RXN TREHALOSEPHOSPHA-RXN] ==
+
== Reaction RXN-11832 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** trehalose-6-phosphate phosphatase
+
** cmp kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.12 ec-3.1.3.12]
+
** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14]
 +
** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[TREHALOSE-6P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[TREHALOSE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ08873]]
+
* Gene: [[SJ21099]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 17: Line 18:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07303]]
+
* Gene: [[SJ21967]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18387]]
+
* Gene: [[SJ08159]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20076]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21183]]
+
* Gene: [[SJ01032]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21324]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21325]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18485]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13486]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17025]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10128]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7900]], glycogen biosynthesis III (from &alpha;-maltose 1-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7900 PWY-7900]
+
* [[PWY-7205]], CMP phosphorylation:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-881]], trehalose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-881 PWY-881]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TREHALOSESYN-PWY]], trehalose biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSESYN-PWY TREHALOSESYN-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TRESYN-PWY]], trehalose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TRESYN-PWY TRESYN-PWY]
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97047
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23420 23420]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11600 11600]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O59845 O59845]
 +
** [http://www.uniprot.org/uniprot/Q29561 Q29561]
 +
** [http://www.uniprot.org/uniprot/P43892 P43892]
 +
** [http://www.uniprot.org/uniprot/Q58071 Q58071]
 +
** [http://www.uniprot.org/uniprot/Q9CEY1 Q9CEY1]
 +
** [http://www.uniprot.org/uniprot/P57064 P57064]
 +
** [http://www.uniprot.org/uniprot/P0A6I0 P0A6I0]
 +
** [http://www.uniprot.org/uniprot/P47572 P47572]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02778 R02778]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00512 R00512]
−
** [http://www.genome.jp/dbget-bin/www_bget?R06228 R06228]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P31678 P31678]
 
−
** [http://www.uniprot.org/uniprot/P31688 P31688]
 
−
** [http://www.uniprot.org/uniprot/Q00786 Q00786]
 
−
** [http://www.uniprot.org/uniprot/P78875 P78875]
 
−
** [http://www.uniprot.org/uniprot/O64896 O64896]
 
−
** [http://www.uniprot.org/uniprot/O64897 O64897]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=trehalose-6-phosphate phosphatase}}
+
{{#set: common-name=cmp kinase}}
−
{{#set: ec-number=ec-3.1.3.12}}
+
{{#set: ec-number=ec-2.7.4.14|ec-2.7.4.25}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-11832

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7205, CMP phosphorylation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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