Difference between revisions of "RXN-11832"
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(Created page with "Category:reaction == Reaction RXN-12003 == * direction: ** reversible * common-name: ** protein-ribulosamine 3-kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.17...") |
(Created page with "Category:reaction == Reaction RXN-8661 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-8661 == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** [histone-h3]-lysine-36 demethylase |
+ | ** histone demethylase activity (h3-k36 specific) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11] |
+ | * synonymous: | ||
+ | ** jmjc domain-containing histone demethylase 1a | ||
+ | ** histone-lysine (h3-k36) demethylase | ||
+ | ** h3-k36-specific demethylase | ||
+ | ** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase | ||
+ | ** jhdm1a | ||
+ | ** histone demethylase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ00708]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ13421]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ18735]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ05371]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ19102]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ19354]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * METANETX-RXN : MNXR122416 |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec- | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785] |
− | {{#set: nb gene associated= | + | {{#set: direction=left-to-right}} |
+ | {{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}} | ||
+ | {{#set: ec-number=ec-1.14.11}} | ||
+ | {{#set: synonymous=histone-lysine (h3-k36) demethylase|jhdm1a|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|h3-k36-specific demethylase|jmjc domain-containing histone demethylase 1a|histone demethylase}} | ||
+ | {{#set: nb gene associated=6}} | ||
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} |
Revision as of 08:34, 15 March 2021
Contents
Reaction RXN-8661
- direction:
- left-to-right
- common-name:
- [histone-h3]-lysine-36 demethylase
- histone demethylase activity (h3-k36 specific)
- ec-number:
- synonymous:
- jmjc domain-containing histone demethylase 1a
- histone-lysine (h3-k36) demethylase
- h3-k36-specific demethylase
- protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
- jhdm1a
- histone demethylase
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 CPD-8901[c] + 1 OXYGEN-MOLECULE[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 FORMALDEHYDE[c] + 1 Protein-L-lysine[c] + 1 SUC[c]
Gene(s) associated with this reaction
- Gene: SJ00708
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ13421
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ18735
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ05371
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ19102
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ19354
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR122416
- RHEA:
Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.