Difference between revisions of "RXN-11838"

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(Created page with "Category:reaction == Reaction RXN-12518 == * direction: ** left-to-right * common-name: ** fatty-acyl coenzyme a oxidase ** acyl-coa oxidase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction GAPDHSYNEC-RXN == * direction: ** reversible * common-name: ** glyceraldehyde-3-phosphate dehydrogenase (nad(p)+) (phosphorylating) * ec-numb...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12518 ==
+
== Reaction GAPDHSYNEC-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** fatty-acyl coenzyme a oxidase
+
** glyceraldehyde-3-phosphate dehydrogenase (nad(p)+) (phosphorylating)
** acyl-coa oxidase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/1.2.1.59 ec-1.2.1.59]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[cis-5-enoyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[trans-2-cis-5-dienoyl-CoA]][c]
+
* 1 [[GAP]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DPG]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ07452]]
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* Gene: [[SJ00348]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ19669]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ03090]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ13468]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ07451]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6837]], fatty acid &beta;-oxidation V (unsaturated, odd number, di-isomerase-dependent):
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
{{#set: common-name=acyl-coa oxidase|fatty-acyl coenzyme a oxidase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01063 R01063]
{{#set: ec-number=ec-1.3.3.6}}
+
* RHEA:
{{#set: nb gene associated=5}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10299 10299]
{{#set: nb pathway associated=1}}
+
{{#set: direction=reversible}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: common-name=glyceraldehyde-3-phosphate dehydrogenase (nad(p)+) (phosphorylating)}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: ec-number=ec-1.2.1.59}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:16, 14 January 2021

Reaction GAPDHSYNEC-RXN

  • direction:
    • reversible
  • common-name:
    • glyceraldehyde-3-phosphate dehydrogenase (nad(p)+) (phosphorylating)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links