Difference between revisions of "RXN-11865"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** reversible * common-name: ** phospho-n-acetylmuramoyl-pentape...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13395 RXN-13395] == * direction: ** left-to-right * common-name: ** arachidonate 5-lipoxygenase...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13395 RXN-13395] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phospho-n-acetylmuramoyl-pentapeptide-transferase
+
** arachidonate 5-lipoxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.13 ec-2.7.8.13]
+
** [http://enzyme.expasy.org/EC/1.13.11.34 ec-1.13.11.34]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[C3]][c] '''+''' 1 [[CPD-9646]][c] '''<=>''' 1 [[C4]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[ARACHIDONIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-8892]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02910]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ16634]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03316]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12567]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05858]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16633]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08276]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21862]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ16632]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05859]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21859]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08291]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
+
* [[PWY66-392]], lipoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-392 PWY66-392]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21923 21923]
+
{{#set: common-name=arachidonate 5-lipoxygenase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.13.11.34}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629]
+
{{#set: nb gene associated=11}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=1}}
−
{{#set: common-name=phospho-n-acetylmuramoyl-pentapeptide-transferase}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec-number=ec-2.7.8.13}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction RXN-13395

  • direction:
    • left-to-right
  • common-name:
    • arachidonate 5-lipoxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-392, lipoxin biosynthesis: PWY66-392
    • 1 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-11865&oldid=24188"