Difference between revisions of "RXN-11866"

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(Created page with "Category:reaction == Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN == * direction: ** left-to-right * common-name: ** 5-formyltetrahydrofolate cyclo-ligase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction RXN-11866 == * direction: ** left-to-right * common-name: ** trna cm32 methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.2...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN ==
+
== Reaction RXN-11866 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 5-formyltetrahydrofolate cyclo-ligase
+
** trna cm32 methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.3.2 ec-6.3.3.2]
+
** [http://enzyme.expasy.org/EC/2.1.1.200 ec-2.1.1.200]
 +
** [http://enzyme.expasy.org/EC/2.1.1.205 ec-2.1.1.205]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[N5-Formyl-THF-Glu-N]][c] '''=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[Cytidine-32-tRNAs]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[2-O-Methylcytidine-32-tRNAs]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19600]]
+
* Gene: [[SJ01024]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02064]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117201
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10489 10489]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42933 42933]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02301 R02301]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P80405 P80405]
 
−
** [http://www.uniprot.org/uniprot/P49914 P49914]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5-formyltetrahydrofolate cyclo-ligase}}
+
{{#set: common-name=trna cm32 methyltransferase}}
−
{{#set: ec-number=ec-6.3.3.2}}
+
{{#set: ec-number=ec-2.1.1.200|ec-2.1.1.205}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-11866

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117201
  • RHEA:





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