Difference between revisions of "RXN-11919"
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(Created page with "Category:reaction == Reaction HACD5m == * direction: ** reversible * common-name: ** 3-hydroxyacyl-coa dehydrogenase (c12:0) == Reaction formula == * 1.0 CPD0-2105[m]...") |
(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 e...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction DNA-LIGASE-ATP-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** dna ligase (atp) |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7] | ||
+ | ** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1] | ||
+ | ** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ13521]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ15543]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ16080]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * LIGAND-RXN: |
− | {{#set: nb gene associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P12000 P12000] | ||
+ | ** [http://www.uniprot.org/uniprot/P18858 P18858] | ||
+ | ** [http://www.uniprot.org/uniprot/P35970 P35970] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57635 Q57635] | ||
+ | ** [http://www.uniprot.org/uniprot/P49917 P49917] | ||
+ | ** [http://www.uniprot.org/uniprot/P49916 P49916] | ||
+ | ** [http://www.uniprot.org/uniprot/P37913 P37913] | ||
+ | ** [http://www.uniprot.org/uniprot/P51892 P51892] | ||
+ | ** [http://www.uniprot.org/uniprot/P16272 P16272] | ||
+ | ** [http://www.uniprot.org/uniprot/P33798 P33798] | ||
+ | ** [http://www.uniprot.org/uniprot/P00970 P00970] | ||
+ | ** [http://www.uniprot.org/uniprot/P00969 P00969] | ||
+ | ** [http://www.uniprot.org/uniprot/P04819 P04819] | ||
+ | ** [http://www.uniprot.org/uniprot/P19088 P19088] | ||
+ | ** [http://www.uniprot.org/uniprot/P07717 P07717] | ||
+ | ** [http://www.uniprot.org/uniprot/P26813 P26813] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02093 Q02093] | ||
+ | ** [http://www.uniprot.org/uniprot/Q23694 Q23694] | ||
+ | ** [http://www.uniprot.org/uniprot/Q67480 Q67480] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42572 Q42572] | ||
+ | ** [http://www.uniprot.org/uniprot/P20492 P20492] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=dna ligase (atp)}} | ||
+ | {{#set: ec-number=ec-6.5.1.1|ec-6.5.1.7|ec-6.5.1.6}} | ||
+ | {{#set: nb gene associated=3}} | ||
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:24, 15 January 2021
Contents
Reaction DNA-LIGASE-ATP-RXN
- direction:
- left-to-right
- common-name:
- dna ligase (atp)
- ec-number:
Reaction formula
- 1 3-Hydroxy-Terminated-DNAs[c] + 1 5-Phospho-terminated-DNAs[c] + 1 ATP[c] => 1 AMP[c] + 1 DNA-N[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ13521
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15543
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16080
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links