Difference between revisions of "RXN-11999"

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(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....")
(Created page with "Category:reaction == Reaction ALCOHOL-DEHYDROG-RXN == * direction: ** reversible * common-name: ** alcohol dehydrogenase (nad) ** alcohol dehydrogenase * ec-number: ** [ht...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BIOTIN-CARBOXYL-RXN ==
+
== Reaction ALCOHOL-DEHYDROG-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** biotin carboxylase
+
** alcohol dehydrogenase (nad)
 +
** alcohol dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
+
** [http://enzyme.expasy.org/EC/1.1.1.1 ec-1.1.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
+
* 1 [[ETOH]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[ACETALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07759]]
−
* Gene: [[SJ14528]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12870]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02214]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12670]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ17987]]
+
* Gene: [[SJ21601]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00485]]
+
* Gene: [[SJ14768]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14529]]
+
== Pathway(s)  ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6587]], pyruvate fermentation to ethanol III:
−
* Gene: [[SJ06726]]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-5480]], pyruvate fermentation to ethanol I:
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[P161-PWY]], acetylene degradation (anaerobic):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6333]], acetaldehyde biosynthesis I:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5486]], pyruvate fermentation to ethanol II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY66-21]], ethanol degradation II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[PWY-5744]], glyoxylate assimilation:
 
−
** '''4''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5743]], 3-hydroxypropanoate cycle:
 
−
** '''5''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 
−
** '''8''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25293 25293]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00754 R00754]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q06862 Q06862]
+
{{#set: common-name=alcohol dehydrogenase|alcohol dehydrogenase (nad)}}
−
** [http://www.uniprot.org/uniprot/O67483 O67483]
+
{{#set: ec-number=ec-1.1.1.1}}
−
** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/Q58626 Q58626]
+
{{#set: nb pathway associated=11}}
−
** [http://www.uniprot.org/uniprot/P43873 P43873]
 
−
** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
 
−
** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
 
−
** [http://www.uniprot.org/uniprot/P24182 P24182]
 
−
** [http://www.uniprot.org/uniprot/O04983 O04983]
 
−
** [http://www.uniprot.org/uniprot/O81273 O81273]
 
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 
−
** [http://www.uniprot.org/uniprot/Q39825 Q39825]
 
−
** [http://www.uniprot.org/uniprot/O23960 O23960]
 
−
** [http://www.uniprot.org/uniprot/O52602 O52602]
 
−
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=biotin carboxylase}}
 
−
{{#set: ec-number=ec-6.3.4.14}}
 
−
{{#set: nb gene associated=8}}
 
−
{{#set: nb pathway associated=4}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:27, 15 January 2021

Reaction ALCOHOL-DEHYDROG-RXN

  • direction:
    • reversible
  • common-name:
    • alcohol dehydrogenase (nad)
    • alcohol dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6587, pyruvate fermentation to ethanol III:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5480, pyruvate fermentation to ethanol I:
    • 1 reactions found over 3 reactions in the full pathway
  • P161-PWY, acetylene degradation (anaerobic):
    • 2 reactions found over 5 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-6333, acetaldehyde biosynthesis I:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5486, pyruvate fermentation to ethanol II:
    • 1 reactions found over 2 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • PWY66-21, ethanol degradation II:
    • 3 reactions found over 3 reactions in the full pathway
  • ETOH-ACETYLCOA-ANA-PWY, ethanol degradation I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii):
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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