Difference between revisions of "RXN-12005"
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(Created page with "Category:reaction == Reaction DISULISOM-RXN == * direction: ** reversible * common-name: ** protein disulfide isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.4....") |
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** prephytoene diphosphate synthase * synonymous: ** geranylgeranyl-diphosphate...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction 2.5.1.32-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** prephytoene diphosphate synthase |
| − | * | + | * synonymous: |
| − | ** | + | ** geranylgeranyl-diphosphate geranylgeranyltransferase |
| + | ** psase | ||
== Reaction formula == | == Reaction formula == | ||
| − | * | + | * 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | + | * Gene: [[SJ02885]] | |
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| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
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== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-7943]], lycopadiene biosynthesis: | ||
| + | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): | ||
| + | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6287]], neurosporene biosynthesis: | ||
| + | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: nb gene associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065] |
| − | {{#set: nb pathway associated= | + | * UNIPROT: |
| + | ** [http://www.uniprot.org/uniprot/P53609 P53609] | ||
| + | ** [http://www.uniprot.org/uniprot/P37295 P37295] | ||
| + | ** [http://www.uniprot.org/uniprot/P22872 P22872] | ||
| + | ** [http://www.uniprot.org/uniprot/P53610 P53610] | ||
| + | ** [http://www.uniprot.org/uniprot/P53612 P53612] | ||
| + | ** [http://www.uniprot.org/uniprot/P17056 P17056] | ||
| + | ** [http://www.uniprot.org/uniprot/P49293 P49293] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=prephytoene diphosphate synthase}} | ||
| + | {{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}} | ||
| + | {{#set: nb gene associated=1}} | ||
| + | {{#set: nb pathway associated=3}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | ||
Revision as of 11:28, 15 January 2021
Contents
Reaction 2.5.1.32-RXN
- direction:
- left-to-right
- common-name:
- prephytoene diphosphate synthase
- synonymous:
- geranylgeranyl-diphosphate geranylgeranyltransferase
- psase
Reaction formula
- 2 GERANYLGERANYL-PP[c] => 1 CPD-464[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ02885
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7943, lycopadiene biosynthesis:
- 1 reactions found over 7 reactions in the full pathway
- PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
- 8 reactions found over 8 reactions in the full pathway
- PWY-6287, neurosporene biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
