Difference between revisions of "RXN-12060"

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(Created page with "Category:reaction == Reaction RXN-4021 == * direction: ** left-to-right * common-name: ** sterol methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.41 ec...")
(Created page with "Category:reaction == Reaction D-PPENTOMUT-RXN == * direction: ** reversible * common-name: ** d-deoxyribose 1,5-phosphomutase ** deoxyribose 1,5-phosphomutase * ec-number:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-4021 ==
+
== Reaction D-PPENTOMUT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** sterol methyltransferase
+
** d-deoxyribose 1,5-phosphomutase
 +
** deoxyribose 1,5-phosphomutase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.41 ec-2.1.1.41]
+
** [http://enzyme.expasy.org/EC/5.4.2.7 ec-5.4.2.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYCLOARTENOL]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-696]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''<=>''' 1 [[DEOXY-RIBOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09766]]
+
* Gene: [[SJ05004]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05905]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14722]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08167]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2541]], phytosterol biosynthesis (plants):
+
* [[PWY-7180]], 2-deoxy-&alpha;-D-ribose 1-phosphate degradation:
−
** '''11''' reactions found over '''35''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis:
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103116
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27661 27661]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07481 R07481]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02749 R02749]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: common-name=sterol methyltransferase}}
+
** [http://www.uniprot.org/uniprot/Q9CH12 Q9CH12]
−
{{#set: ec-number=ec-2.1.1.41}}
+
** [http://www.uniprot.org/uniprot/O24821 O24821]
−
{{#set: nb gene associated=4}}
+
** [http://www.uniprot.org/uniprot/P0A6K6 P0A6K6]
−
{{#set: nb pathway associated=2}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: common-name=deoxyribose 1,5-phosphomutase|d-deoxyribose 1,5-phosphomutase}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: ec-number=ec-5.4.2.7}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction D-PPENTOMUT-RXN

  • direction:
    • reversible
  • common-name:
    • d-deoxyribose 1,5-phosphomutase
    • deoxyribose 1,5-phosphomutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7180, 2-deoxy-α-D-ribose 1-phosphate degradation:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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