Difference between revisions of "RXN-12074"

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(Created page with "Category:reaction == Reaction 5.3.4.1-RXN == * direction: ** reversible * common-name: ** protein disulfide isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.4.1...")
(Created page with "Category:reaction == Reaction R230-RXN == * direction: ** reversible * common-name: ** (2r)-3-sulfolactate dehydrogenase (nad+) ** (r)-sulfolactate dehydrogenase * ec-numb...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 5.3.4.1-RXN ==
+
== Reaction R230-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** protein disulfide isomerase
+
** (2r)-3-sulfolactate dehydrogenase (nad+)
 +
** (r)-sulfolactate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.4.1 ec-5.3.4.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.337 ec-1.1.1.337]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Proteins-with-incorrect-disulfides]][c] '''<=>''' 1 [[Proteins-with-correct-disulfides]][c]
+
* 1 [[CPD-367]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-380]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ06713]]
−
* Gene: [[SJ17411]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11283]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17455]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02706]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09446]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08265]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13150]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09445]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16659]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08165]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ07095]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06720]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16004]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P261-PWY]], coenzyme M biosynthesis I:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6642]], (R)-cysteate degradation:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
−
* UNIPROT:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15536 15536]
−
** [http://www.uniprot.org/uniprot/P13667 P13667]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P11598 P11598]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07136 R07136]
−
** [http://www.uniprot.org/uniprot/P21195 P21195]
 
−
** [http://www.uniprot.org/uniprot/P0AEG4 P0AEG4]
 
−
** [http://www.uniprot.org/uniprot/P29828 P29828]
 
−
** [http://www.uniprot.org/uniprot/P32557 P32557]
 
−
** [http://www.uniprot.org/uniprot/Q27780 Q27780]
 
−
** [http://www.uniprot.org/uniprot/P31810 P31810]
 
−
** [http://www.uniprot.org/uniprot/Q9PDE2 Q9PDE2]
 
−
** [http://www.uniprot.org/uniprot/O27777 O27777]
 
−
** [http://www.uniprot.org/uniprot/Q9JSN7 Q9JSN7]
 
−
** [http://www.uniprot.org/uniprot/P45111 P45111]
 
−
** [http://www.uniprot.org/uniprot/P0AEG6 P0AEG6]
 
−
** [http://www.uniprot.org/uniprot/O68904 O68904]
 
−
** [http://www.uniprot.org/uniprot/Q9PCE7 Q9PCE7]
 
−
** [http://www.uniprot.org/uniprot/Q9PDF5 Q9PDF5]
 
−
** [http://www.uniprot.org/uniprot/Q9JSY5 Q9JSY5]
 
−
** [http://www.uniprot.org/uniprot/Q9KPF0 Q9KPF0]
 
−
** [http://www.uniprot.org/uniprot/P95460 P95460]
 
−
** [http://www.uniprot.org/uniprot/P05307 P05307]
 
−
** [http://www.uniprot.org/uniprot/P17967 P17967]
 
−
** [http://www.uniprot.org/uniprot/P09102 P09102]
 
−
** [http://www.uniprot.org/uniprot/P07237 P07237]
 
−
** [http://www.uniprot.org/uniprot/P08003 P08003]
 
−
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 
−
** [http://www.uniprot.org/uniprot/P04785 P04785]
 
−
** [http://www.uniprot.org/uniprot/P55059 P55059]
 
−
** [http://www.uniprot.org/uniprot/Q27553 Q27553]
 
−
** [http://www.uniprot.org/uniprot/P30101 P30101]
 
−
** [http://www.uniprot.org/uniprot/Q7M1Q4 Q7M1Q4]
 
−
** [http://www.uniprot.org/uniprot/Q04815 Q04815]
 
−
** [http://www.uniprot.org/uniprot/P39691 P39691]
 
−
** [http://www.uniprot.org/uniprot/P34329 P34329]
 
−
** [http://www.uniprot.org/uniprot/Q12730 Q12730]
 
−
** [http://www.uniprot.org/uniprot/Q43116 Q43116]
 
−
** [http://www.uniprot.org/uniprot/Q9TWZ1 Q9TWZ1]
 
−
** [http://www.uniprot.org/uniprot/P52588 P52588]
 
−
** [http://www.uniprot.org/uniprot/Q17967 Q17967]
 
−
** [http://www.uniprot.org/uniprot/P52234 P52234]
 
−
** [http://www.uniprot.org/uniprot/O22263 O22263]
 
−
** [http://www.uniprot.org/uniprot/P93358 P93358]
 
−
** [http://www.uniprot.org/uniprot/P80284 P80284]
 
−
** [http://www.uniprot.org/uniprot/P52589 P52589]
 
−
** [http://www.uniprot.org/uniprot/O48949 O48949]
 
−
** [http://www.uniprot.org/uniprot/P38661 P38661]
 
−
** [http://www.uniprot.org/uniprot/O13704 O13704]
 
−
** [http://www.uniprot.org/uniprot/O13811 O13811]
 
−
** [http://www.uniprot.org/uniprot/Q10057 Q10057]
 
−
** [http://www.uniprot.org/uniprot/Q92249 Q92249]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=protein disulfide isomerase}}
+
{{#set: common-name=(2r)-3-sulfolactate dehydrogenase (nad+)|(r)-sulfolactate dehydrogenase}}
−
{{#set: ec-number=ec-5.3.4.1}}
+
{{#set: ec-number=ec-1.1.1.337}}
−
{{#set: nb gene associated=14}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:06, 14 January 2021

Reaction R230-RXN

  • direction:
    • reversible
  • common-name:
    • (2r)-3-sulfolactate dehydrogenase (nad+)
    • (r)-sulfolactate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P261-PWY, coenzyme M biosynthesis I:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6642, (R)-cysteate degradation:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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