Difference between revisions of "RXN-12088"

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(Created page with "Category:reaction == Reaction RXN-16415 == * direction: ** left-to-right * common-name: ** very-long-chain fatty-acyl-coa synthetase ** long-chain fatty acid-coa ligase *...")
(Created page with "Category:reaction == Reaction RXN-11976 == * direction: ** left-to-right * common-name: ** torulene synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1] =...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-16415 ==
+
== Reaction RXN-11976 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** very-long-chain fatty-acyl-coa synthetase
+
** torulene synthase
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Very-long-chain-fatty-acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[VERY-LONG-CHAIN-FATTY-ACYL-COA]][c]
+
* 1 [[CPD-12932]][c] '''=>''' 1 [[CPD-7953]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[SJ08691]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ03650]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ08692]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ08690]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ05591]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ13972]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6681]], neurosporaxanthin biosynthesis:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=very-long-chain fatty-acyl-coa synthetase|long-chain fatty acid-coa ligase}}
+
{{#set: common-name=torulene synthase}}
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: ec-number=ec-2.5.1}}
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=0}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 19:00, 14 January 2021

Reaction RXN-11976

  • direction:
    • left-to-right
  • common-name:
    • torulene synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6681, neurosporaxanthin biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links