Difference between revisions of "RXN-12178"
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(Created page with "Category:reaction == Reaction RXN-10978 == * direction: ** reversible * common-name: ** 3-diphosphoinositol pentakisphosphate phosphohydrolase * ec-number: ** [http://enzy...") |
(Created page with "Category:reaction == Reaction RXN-7676 == * direction: ** left-to-right * common-name: ** chlorophyllide-a monooxygenase ** chlorophyllide-a:oxygen 7-oxidoreductase ** chl...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-7676 == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** chlorophyllide-a monooxygenase |
− | * | + | ** chlorophyllide-a:oxygen 7-oxidoreductase |
− | ** [ | + | ** chlorophyllide a oxygenase [overall] |
+ | * synonymous: | ||
+ | ** cao | ||
+ | ** chlorophyll-b synthase | ||
+ | ** chlorophyllide a oxygenase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-7015]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ16078]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ07178]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ15075]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04336]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ22311]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ22309]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00278]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ17313]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ08869]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-5068]], chlorophyll cycle: | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22677 22677] |
− | {{#set: | + | * LIGAND-RXN: |
− | {{#set: nb gene associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R08203 R08203] |
− | {{#set: nb pathway associated= | + | {{#set: direction=left-to-right}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: common-name=chlorophyllide a oxygenase [overall]|chlorophyllide-a monooxygenase|chlorophyllide-a:oxygen 7-oxidoreductase}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: synonymous=cao|chlorophyll-b synthase|chlorophyllide a oxygenase}} |
+ | {{#set: nb gene associated=9}} | ||
+ | {{#set: nb pathway associated=1}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:15, 14 January 2021
Contents
Reaction RXN-7676
- direction:
- left-to-right
- common-name:
- chlorophyllide-a monooxygenase
- chlorophyllide-a:oxygen 7-oxidoreductase
- chlorophyllide a oxygenase [overall]
- synonymous:
- cao
- chlorophyll-b synthase
- chlorophyllide a oxygenase
Reaction formula
- 1 CHLOROPHYLLIDE-A[c] + 1 NADPH[c] + 1 OXYGEN-MOLECULE[c] + 1 PROTON[c] => 1 CPD-7015[c] + 1 NADP[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ16078
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ07178
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ15075
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04336
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ22311
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ22309
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00278
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17313
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ08869
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5068, chlorophyll cycle:
- 4 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
Property "Common-name" (as page type) with input value "chlorophyllide a oxygenase [overall" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.