Difference between revisions of "RXN-12198"

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(Created page with "Category:reaction == Reaction ADENYLATECYC-RXN == * direction: ** left-to-right * common-name: ** adenylate cyclase * ec-number: ** [http://enzyme.expasy.org/EC/4.6.1.1 ec...")
(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** uroporph...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENYLATECYC-RXN ==
+
== Reaction RXN-8675 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** adenylate cyclase
+
** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/4.6.1.1 ec-4.6.1.1]
+
** uroporphyrinogen methyltransferase
 +
** uroporphyrinogen-iii methyltransferase
 +
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 +
** sira
 +
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 +
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
 +
** uroporphyrin-iii c-methyltransferase (incorrect)
 +
** cysg
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''=>''' 1 [[CAMP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03055]]
+
* Gene: [[SJ12313]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04704]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10129]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08883]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01312]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
 +
** '''2''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
 +
** '''4''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5196]], factor 430 biosynthesis:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5194]], siroheme biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15390 15390]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00089 R00089]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P14605 P14605]
 
−
** [http://www.uniprot.org/uniprot/Q05766 Q05766]
 
−
** [http://www.uniprot.org/uniprot/P21932 P21932]
 
−
** [http://www.uniprot.org/uniprot/P19754 P19754]
 
−
** [http://www.uniprot.org/uniprot/P26769 P26769]
 
−
** [http://www.uniprot.org/uniprot/P26770 P26770]
 
−
** [http://www.uniprot.org/uniprot/Q03343 Q03343]
 
−
** [http://www.uniprot.org/uniprot/Q01341 Q01341]
 
−
** [http://www.uniprot.org/uniprot/P40134 P40134]
 
−
** [http://www.uniprot.org/uniprot/P40146 P40146]
 
−
** [http://www.uniprot.org/uniprot/P51829 P51829]
 
−
** [http://www.uniprot.org/uniprot/P49606 P49606]
 
−
** [http://www.uniprot.org/uniprot/P0A1A7 P0A1A7]
 
−
** [http://www.uniprot.org/uniprot/P19485 P19485]
 
−
** [http://www.uniprot.org/uniprot/Q03100 Q03100]
 
−
** [http://www.uniprot.org/uniprot/P32870 P32870]
 
−
** [http://www.uniprot.org/uniprot/Q08462 Q08462]
 
−
** [http://www.uniprot.org/uniprot/P43524 P43524]
 
−
** [http://www.uniprot.org/uniprot/Q44561 Q44561]
 
−
** [http://www.uniprot.org/uniprot/P51830 P51830]
 
−
** [http://www.uniprot.org/uniprot/Q01513 Q01513]
 
−
** [http://www.uniprot.org/uniprot/P40136 P40136]
 
−
** [http://www.uniprot.org/uniprot/P15318 P15318]
 
−
** [http://www.uniprot.org/uniprot/P08678 P08678]
 
−
** [http://www.uniprot.org/uniprot/P23466 P23466]
 
−
** [http://www.uniprot.org/uniprot/P00936 P00936]
 
−
** [http://www.uniprot.org/uniprot/P27580 P27580]
 
−
** [http://www.uniprot.org/uniprot/P40145 P40145]
 
−
** [http://www.uniprot.org/uniprot/P26338 P26338]
 
−
** [http://www.uniprot.org/uniprot/P40130 P40130]
 
−
** [http://www.uniprot.org/uniprot/P30528 P30528]
 
−
** [http://www.uniprot.org/uniprot/Q9QW33 Q9QW33]
 
−
** [http://www.uniprot.org/uniprot/P72951 P72951]
 
−
** [http://www.uniprot.org/uniprot/P40138 P40138]
 
−
** [http://www.uniprot.org/uniprot/Q9VW60 Q9VW60]
 
−
** [http://www.uniprot.org/uniprot/O96306 O96306]
 
−
** [http://www.uniprot.org/uniprot/Q9Z286 Q9Z286]
 
−
** [http://www.uniprot.org/uniprot/O76229 O76229]
 
−
** [http://www.uniprot.org/uniprot/O77079 O77079]
 
−
** [http://www.uniprot.org/uniprot/O96762 O96762]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=adenylate cyclase}}
+
{{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}}
−
{{#set: ec-number=ec-4.6.1.1}}
+
{{#set: synonymous=uroporphyrinogen methyltransferase|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|sira|adenosylmethionine-uroporphyrinogen iii methyltransferase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction RXN-8675

  • direction:
    • left-to-right
  • common-name:
    • s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
  • synonymous:
    • uroporphyrinogen methyltransferase
    • uroporphyrinogen-iii methyltransferase
    • s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
    • sira
    • adenosylmethionine-uroporphyrinogen iii methyltransferase
    • s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
    • uroporphyrin-iii c-methyltransferase (incorrect)
    • cysg

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5194, siroheme biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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