Difference between revisions of "RXN-1223"

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(Created page with "Category:reaction == Reaction DALADALALIG-RXN == * direction: ** left-to-right * common-name: ** d-alanine-d-alanine ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:reaction == Reaction RXN-1223 == * direction: ** left-to-right * common-name: ** udp-sulfoquinovose synthase * ec-number: ** [http://enzyme.expasy.org/EC/3.13.1.1...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DALADALALIG-RXN ==
+
== Reaction RXN-1223 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** d-alanine-d-alanine ligase
+
** udp-sulfoquinovose synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.2.4 ec-6.3.2.4]
+
** [http://enzyme.expasy.org/EC/3.13.1.1 ec-3.13.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 2 [[D-ALANINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CPD-12575]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''=>''' 1 [[UDP-SULFOQUINOVOSE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17851]]
+
* Gene: [[SJ00902]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12670]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02214]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12870]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06726]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
+
* [[PWYQT-4427]], sulfoquinovosyl diacylglycerol biosynthesis:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR143399
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11224 11224]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13197 13197]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01150 R01150]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05775 R05775]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O83676 O83676]
 
−
** [http://www.uniprot.org/uniprot/O66806 O66806]
 
−
** [http://www.uniprot.org/uniprot/P46805 P46805]
 
−
** [http://www.uniprot.org/uniprot/P0A1F0 P0A1F0]
 
−
** [http://www.uniprot.org/uniprot/P0A6J8 P0A6J8]
 
−
** [http://www.uniprot.org/uniprot/P07862 P07862]
 
−
** [http://www.uniprot.org/uniprot/P96612 P96612]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDS6 Q9ZDS6]
 
−
** [http://www.uniprot.org/uniprot/Q9CIL5 Q9CIL5]
 
−
** [http://www.uniprot.org/uniprot/P44405 P44405]
 
−
** [http://www.uniprot.org/uniprot/Q9PPC2 Q9PPC2]
 
−
** [http://www.uniprot.org/uniprot/Q9JSZ9 Q9JSZ9]
 
−
** [http://www.uniprot.org/uniprot/P35660 P35660]
 
−
** [http://www.uniprot.org/uniprot/P73632 P73632]
 
−
** [http://www.uniprot.org/uniprot/Q9XAK7 Q9XAK7]
 
−
** [http://www.uniprot.org/uniprot/Q9RLE4 Q9RLE4]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=d-alanine-d-alanine ligase}}
+
{{#set: common-name=udp-sulfoquinovose synthase}}
−
{{#set: ec-number=ec-6.3.2.4}}
+
{{#set: ec-number=ec-3.13.1.1}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-1223

  • direction:
    • left-to-right
  • common-name:
    • udp-sulfoquinovose synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWYQT-4427, sulfoquinovosyl diacylglycerol biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR143399
  • RHEA:
  • LIGAND-RXN:





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