Difference between revisions of "RXN-12244"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 1.1.1.39-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylase *...")
(Created page with "Category:reaction == Reaction RXN-12244 == * direction: ** left-to-right * common-name: ** 15-cis-phytoene desaturase ** 15,9'-di-cis phytofluene desaturase * synonymous:...")
 
(4 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.39-RXN ==
+
== Reaction RXN-12244 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** malate dehydrogenase (decarboxylating) (nad+)
+
** 15-cis-phytoene desaturase
−
** oxaloacetate decarboxylase
+
** 15,9'-di-cis phytofluene desaturase
−
** malate dehydrogenase, nad-requiring
+
* synonymous:
−
* ec-number:
+
** phytoene desaturase (ambiguous)
−
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
+
** pds
−
** [http://enzyme.expasy.org/EC/1.1.1.39 ec-1.1.1.39]
+
** plant-type phytoene desaturase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[CPD-13171]][c] '''+''' 1 [[PLASTOQUINONE]][c] '''=>''' 1 [[CPD-7535]][c] '''+''' 1 [[Plastoquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14191]]
+
* Gene: [[SJ08891]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11643]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7118]], chitin degradation to ethanol:
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7686]], L-malate degradation II:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3641]], L-carnitine degradation III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117437
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30198 30198]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 
−
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
 
−
** [http://www.uniprot.org/uniprot/O59029 O59029]
 
−
** [http://www.uniprot.org/uniprot/P16468 P16468]
 
−
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
 
−
** [http://www.uniprot.org/uniprot/P26616 P26616]
 
−
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
 
−
** [http://www.uniprot.org/uniprot/P37224 P37224]
 
−
** [http://www.uniprot.org/uniprot/P37225 P37225]
 
−
** [http://www.uniprot.org/uniprot/P37221 P37221]
 
−
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
 
−
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malate dehydrogenase, nad-requiring|malate dehydrogenase (decarboxylating) (nad+)|oxaloacetate decarboxylase}}
+
{{#set: common-name=15-cis-phytoene desaturase|15,9'-di-cis phytofluene desaturase}}
−
{{#set: ec-number=ec-1.1.1.38|ec-1.1.1.39}}
+
{{#set: synonymous=phytoene desaturase (ambiguous)|pds|plant-type phytoene desaturase}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-12244

  • direction:
    • left-to-right
  • common-name:
    • 15-cis-phytoene desaturase
    • 15,9'-di-cis phytofluene desaturase
  • synonymous:
    • phytoene desaturase (ambiguous)
    • pds
    • plant-type phytoene desaturase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117437
  • RHEA:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12244&oldid=142038"