Difference between revisions of "RXN-12322"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2501 PWY-2501] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3193 tax-31...") |
(Created page with "Category:reaction == Reaction RXN0-302 == * direction: ** left-to-right * common-name: ** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase * ec-number: ** [http://enzy...") |
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| Line 1: | Line 1: | ||
| − | [[Category: | + | [[Category:reaction]] |
| − | == | + | == Reaction RXN0-302 == |
| − | * | + | * direction: |
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase |
| − | == Reaction(s) | + | * ec-number: |
| − | * [[ | + | ** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12] |
| − | == | + | == Reaction formula == |
| − | * [ | + | * 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c] |
| − | * [http:// | + | == Gene(s) associated with this reaction == |
| − | * [http:// | + | * Gene: [[SJ21110]] |
| − | {{#set: | + | ** Category: [[annotation]] |
| − | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | {{#set: nb | + | ** Category: [[orthology]] |
| − | {{#set: | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | {{#set: | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| + | == Pathway(s) == | ||
| + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-7560]], methylerythritol phosphate pathway II: | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}} | ||
| + | {{#set: ec-number=ec-4.6.1.12}} | ||
| + | {{#set: nb gene associated=1}} | ||
| + | {{#set: nb pathway associated=2}} | ||
| + | {{#set: reconstruction category=annotation|orthology}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
| + | {{#set: reconstruction comment=n.a}} | ||
| + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}} | ||
Revision as of 20:45, 18 December 2020
Contents
Reaction RXN0-302
- direction:
- left-to-right
- common-name:
- 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
- ec-number:
Reaction formula
- 1 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET[c] => 1 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE[c] + 1 CMP[c]
Gene(s) associated with this reaction
- Gene: SJ21110
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- NONMEVIPP-PWY, methylerythritol phosphate pathway I:
- 9 reactions found over 9 reactions in the full pathway
- PWY-7560, methylerythritol phosphate pathway II:
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
