Difference between revisions of "RXN-12353"

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(Created page with "Category:reaction == Reaction 3.4.11.1-RXN == * direction: ** left-to-right * common-name: ** aminopeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.1...")
(Created page with "Category:reaction == Reaction THREONINE-ALDOLASE-RXN == * direction: ** left-to-right * common-name: ** threonine aldolase * ec-number: ** [http://enzyme.expasy.org/EC/4.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.11.1-RXN ==
+
== Reaction THREONINE-ALDOLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** aminopeptidase
+
** threonine aldolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.11.9]
+
** [http://enzyme.expasy.org/EC/4.1.2.48 ec-4.1.2.48]
−
** [http://enzyme.expasy.org/EC/3.4.11.1 ec-3.4.11.1]
+
** [http://enzyme.expasy.org/EC/4.1.2.5 ec-4.1.2.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-With-N-Terminal-X-Pro]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Amino-Acids-20]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Protein-With-N-Terminal-Pro]][c]
+
* 1 [[THR]][c] '''=>''' 1 [[ACETALD]][c] '''+''' 1 [[GLY]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21022]]
+
* Gene: [[SJ12304]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00234]]
+
* Gene: [[SJ06446]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21020]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21032]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5436]], L-threonine degradation IV:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[GLYSYN-THR-PWY]], glycine biosynthesis IV:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P27888 P27888]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19626 19626]
−
** [http://www.uniprot.org/uniprot/P00727 P00727]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P68767 P68767]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00751 R00751]
−
** [http://www.uniprot.org/uniprot/P45334 P45334]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI8 Q9JTI8]
 
−
** [http://www.uniprot.org/uniprot/Q9PP04 Q9PP04]
 
−
** [http://www.uniprot.org/uniprot/P24828 P24828]
 
−
** [http://www.uniprot.org/uniprot/P23341 P23341]
 
−
** [http://www.uniprot.org/uniprot/P28839 P28839]
 
−
** [http://www.uniprot.org/uniprot/P30184 P30184]
 
−
** [http://www.uniprot.org/uniprot/P31427 P31427]
 
−
** [http://www.uniprot.org/uniprot/Q42876 Q42876]
 
−
** [http://www.uniprot.org/uniprot/Q48531 Q48531]
 
−
** [http://www.uniprot.org/uniprot/O24022 O24022]
 
−
** [http://www.uniprot.org/uniprot/Q10712 Q10712]
 
−
** [http://www.uniprot.org/uniprot/Q43034 Q43034]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aminopeptidase}}
+
{{#set: common-name=threonine aldolase}}
−
{{#set: ec-number=ec-3.4.11.9|ec-3.4.11.1}}
+
{{#set: ec-number=ec-4.1.2.48|ec-4.1.2.5}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:00, 14 January 2021

Reaction THREONINE-ALDOLASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5436, L-threonine degradation IV:
    • 1 reactions found over 2 reactions in the full pathway
  • GLYSYN-THR-PWY, glycine biosynthesis IV:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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