Difference between revisions of "RXN-12353"

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(Created page with "Category:reaction == Reaction 2.7.7.15-RXN == * direction: ** left-to-right * common-name: ** choline-phosphate cytidylyltransferase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction 3.4.11.1-RXN == * direction: ** left-to-right * common-name: ** aminopeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.7.7.15-RXN ==
+
== Reaction 3.4.11.1-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** choline-phosphate cytidylyltransferase
+
** aminopeptidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.15 ec-2.7.7.15]
+
** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.11.9]
 +
** [http://enzyme.expasy.org/EC/3.4.11.1 ec-3.4.11.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CTP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CDP-CHOLINE]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Protein-With-N-Terminal-X-Pro]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Amino-Acids-20]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Protein-With-N-Terminal-Pro]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19268]]
+
* Gene: [[SJ21022]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00234]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21020]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21032]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY3O-450]], phosphatidylcholine biosynthesis I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3561]], choline biosynthesis III:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae):
 
−
** '''2''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY4FS-2]], phosphatidylcholine biosynthesis II:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7782]], plasmalogen biosynthesis:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18998 18998]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01890 R01890]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19836 P19836]
+
** [http://www.uniprot.org/uniprot/P27888 P27888]
−
** [http://www.uniprot.org/uniprot/P49586 P49586]
+
** [http://www.uniprot.org/uniprot/P00727 P00727]
−
** [http://www.uniprot.org/uniprot/P49584 P49584]
+
** [http://www.uniprot.org/uniprot/P68767 P68767]
−
** [http://www.uniprot.org/uniprot/P49585 P49585]
+
** [http://www.uniprot.org/uniprot/P45334 P45334]
−
** [http://www.uniprot.org/uniprot/P49587 P49587]
+
** [http://www.uniprot.org/uniprot/Q9JTI8 Q9JTI8]
−
** [http://www.uniprot.org/uniprot/P93470 P93470]
+
** [http://www.uniprot.org/uniprot/Q9PP04 Q9PP04]
−
** [http://www.uniprot.org/uniprot/Q42619 Q42619]
+
** [http://www.uniprot.org/uniprot/P24828 P24828]
−
** [http://www.uniprot.org/uniprot/Q42620 Q42620]
+
** [http://www.uniprot.org/uniprot/P23341 P23341]
−
** [http://www.uniprot.org/uniprot/Q42621 Q42621]
+
** [http://www.uniprot.org/uniprot/P28839 P28839]
−
** [http://www.uniprot.org/uniprot/Q42622 Q42622]
+
** [http://www.uniprot.org/uniprot/P30184 P30184]
−
** [http://www.uniprot.org/uniprot/P13259 P13259]
+
** [http://www.uniprot.org/uniprot/P31427 P31427]
 +
** [http://www.uniprot.org/uniprot/Q42876 Q42876]
 +
** [http://www.uniprot.org/uniprot/Q48531 Q48531]
 +
** [http://www.uniprot.org/uniprot/O24022 O24022]
 +
** [http://www.uniprot.org/uniprot/Q10712 Q10712]
 +
** [http://www.uniprot.org/uniprot/Q43034 Q43034]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=choline-phosphate cytidylyltransferase}}
+
{{#set: common-name=aminopeptidase}}
−
{{#set: ec-number=ec-2.7.7.15}}
+
{{#set: ec-number=ec-3.4.11.9|ec-3.4.11.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:13, 14 January 2021

Reaction 3.4.11.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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