Difference between revisions of "RXN-12398"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7984 RXN-7984] == * direction: ** left-to-right * common-name: ** violaxanthin de-epoxidase * s...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16759 RXN-16759] == * direction: ** reversible * common-name: ** holo-[acyl-carrier-protein] sy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7984 RXN-7984] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16759 RXN-16759] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** violaxanthin de-epoxidase
+
** holo-[acyl-carrier-protein] synthase
−
* synonymous:
+
* ec-number:
−
** vde
+
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASCORBATE]][c] '''+''' 1 [[CPD1F-133]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD1F-131]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[LYS2-peptidyl-carrier-protein]][c] '''<=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[Holo-LYS2-peptidyl-carrier-protein]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19927]]
+
* Gene: [[SJ19702]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03764]]
+
* Gene: [[SJ00669]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20456]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15354 15354]
+
{{#set: common-name=holo-[acyl-carrier-protein] synthase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.7.8.7}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07178 R07178]
+
{{#set: nb gene associated=2}}
−
{{#set: direction=left-to-right}}
+
{{#set: nb pathway associated=0}}
−
{{#set: common-name=violaxanthin de-epoxidase}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: synonymous=vde}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction RXN-16759

  • direction:
    • reversible
  • common-name:
    • holo-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Property "Common-name" (as page type) with input value "holo-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12398&oldid=35721"