Difference between revisions of "RXN-12458"
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(Created page with "Category:reaction == Reaction TIGLYLCOA-HYDROXY-RXN == * direction: ** reversible * common-name: ** tiglyl-coa hydratase ** enoyl-coa hydratase ** tiglyl-coa hydrase * ec-...") |
(Created page with "Category:reaction == Reaction QUINOPRIBOTRANS-RXN == * direction: ** left-to-right * common-name: ** quinolinate phosphoribosyltransferase (decarboxylating) ** nicotinate-...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction QUINOPRIBOTRANS-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** quinolinate phosphoribosyltransferase (decarboxylating) |
− | + | ** nicotinate-nucleotide diphosphorylase (carboxylating) | |
− | ** | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/4.2. | + | ** [http://enzyme.expasy.org/EC/2.4.2.19 ec-2.4.2.19] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[QUINOLINATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ19144]] | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ04451]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ11253]] |
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate): |
− | ** '''3''' reactions found over ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
+ | * [[PWY-7342]], superpathway of nicotine biosynthesis: | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5316]], nicotine biosynthesis: | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | |||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR101980 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12735 12735] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8] |
− | {{#set: ec-number=ec-4.2. | + | ** [http://www.uniprot.org/uniprot/Q57916 Q57916] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P30011 P30011] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P46714 P46714] |
− | {{#set: reconstruction category=annotation | + | ** [http://www.uniprot.org/uniprot/Q15274 Q15274] |
− | {{#set: reconstruction tool=pathwaytools | + | ** [http://www.uniprot.org/uniprot/P77938 P77938] |
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=nicotinate-nucleotide diphosphorylase (carboxylating)|quinolinate phosphoribosyltransferase (decarboxylating)}} | ||
+ | {{#set: ec-number=ec-2.4.2.19}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=4}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana| | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:33, 15 March 2021
Contents
Reaction QUINOPRIBOTRANS-RXN
- direction:
- left-to-right
- common-name:
- quinolinate phosphoribosyltransferase (decarboxylating)
- nicotinate-nucleotide diphosphorylase (carboxylating)
- ec-number:
Reaction formula
- 2 PROTON[c] + 1 PRPP[c] + 1 QUINOLINATE[c] => 1 CARBON-DIOXIDE[c] + 1 NICOTINATE_NUCLEOTIDE[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ19144
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04451
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11253
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
- 3 reactions found over 4 reactions in the full pathway
- PYRIDNUCSYN-PWY, NAD de novo biosynthesis I (from aspartate):
- 6 reactions found over 6 reactions in the full pathway
- PWY-7342, superpathway of nicotine biosynthesis:
- 4 reactions found over 9 reactions in the full pathway
- PWY-5316, nicotine biosynthesis:
- 3 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR101980
- RHEA:
- LIGAND-RXN:
- UNIPROT: