Difference between revisions of "RXN-12478"

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(Created page with "Category:reaction == Reaction GART-RXN == * direction: ** reversible * common-name: ** phosphoribosylglycinamide formyltransferase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-11244 == * direction: ** left-to-right * common-name: ** enoyl-coa hydratase ** 4-coumaroyl-coa hydratase * ec-number: ** [http://enzyme....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GART-RXN ==
+
== Reaction RXN-11244 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoribosylglycinamide formyltransferase
+
** enoyl-coa hydratase
 +
** 4-coumaroyl-coa hydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.2 ec-2.1.2.2]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12199]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ10275]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03913]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
+
* [[PWY-7046]], 4-coumarate degradation (anaerobic):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
+
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15056 15056]
+
{{#set: common-name=4-coumaroyl-coa hydratase|enoyl-coa hydratase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-4.2.1.17}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04325 R04325]
+
{{#set: nb gene associated=6}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
 
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
 
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
 
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
 
−
** [http://www.uniprot.org/uniprot/Q9PIU2 Q9PIU2]
 
−
** [http://www.uniprot.org/uniprot/Q9JTJ1 Q9JTJ1]
 
−
** [http://www.uniprot.org/uniprot/P43846 P43846]
 
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 
−
** [http://www.uniprot.org/uniprot/Q42805 Q42805]
 
−
** [http://www.uniprot.org/uniprot/Q9UUK7 Q9UUK7]
 
−
** [http://www.uniprot.org/uniprot/P12040 P12040]
 
−
** [http://www.uniprot.org/uniprot/P08179 P08179]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoribosylglycinamide formyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.2}}
 
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction RXN-11244

  • direction:
    • left-to-right
  • common-name:
    • enoyl-coa hydratase
    • 4-coumaroyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7046, 4-coumarate degradation (anaerobic):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6435, 4-hydroxybenzoate biosynthesis III (plants):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12478&oldid=114315"