Difference between revisions of "RXN-12478"

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(Created page with "Category:reaction == Reaction GART-RXN == * direction: ** reversible * common-name: ** phosphoribosylglycinamide formyltransferase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-12478 == * direction: ** left-to-right * common-name: ** cytidine4 in trnagly(gcc) 2'-o-methyltransferase * ec-number: ** [http://enzyme....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GART-RXN ==
+
== Reaction RXN-12478 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoribosylglycinamide formyltransferase
+
** cytidine4 in trnagly(gcc) 2'-o-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.2 ec-2.1.2.2]
+
** [http://enzyme.expasy.org/EC/2.1.1.225 ec-2.1.1.225]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[Cytidine4-tRNAGly-GCC]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[2-O-MeCytidine4-tRNAGLY-GCC]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
* Gene: [[SJ07716]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
+
* [[PWY-6829]], tRNA methylation (yeast):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117586
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15056 15056]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43193 43193]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04325 R04325]
+
{{#set: common-name=cytidine4 in trnagly(gcc) 2'-o-methyltransferase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-2.1.1.225}}
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
 
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
 
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
 
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
 
−
** [http://www.uniprot.org/uniprot/Q9PIU2 Q9PIU2]
 
−
** [http://www.uniprot.org/uniprot/Q9JTJ1 Q9JTJ1]
 
−
** [http://www.uniprot.org/uniprot/P43846 P43846]
 
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 
−
** [http://www.uniprot.org/uniprot/Q42805 Q42805]
 
−
** [http://www.uniprot.org/uniprot/Q9UUK7 Q9UUK7]
 
−
** [http://www.uniprot.org/uniprot/P12040 P12040]
 
−
** [http://www.uniprot.org/uniprot/P08179 P08179]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoribosylglycinamide formyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.2}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-12478

  • direction:
    • left-to-right
  • common-name:
    • cytidine4 in trnagly(gcc) 2'-o-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6829, tRNA methylation (yeast):
    • 11 reactions found over 15 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117586
  • RHEA:





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