Difference between revisions of "RXN-12478"

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(Created page with "Category:reaction == Reaction RXN-11244 == * direction: ** left-to-right * common-name: ** enoyl-coa hydratase ** 4-coumaroyl-coa hydratase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction RXN-12478 == * direction: ** left-to-right * common-name: ** cytidine4 in trnagly(gcc) 2'-o-methyltransferase * ec-number: ** [http://enzyme....")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11244 ==
+
== Reaction RXN-12478 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** enoyl-coa hydratase
+
** cytidine4 in trnagly(gcc) 2'-o-methyltransferase
−
** 4-coumaroyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/2.1.1.225 ec-2.1.1.225]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12199]][c]
+
* 1 [[Cytidine4-tRNAGly-GCC]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[2-O-MeCytidine4-tRNAGLY-GCC]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07716]]
−
* Gene: [[SJ10275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03913]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7046]], 4-coumarate degradation (anaerobic):
+
* [[PWY-6829]], tRNA methylation (yeast):
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''11''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117586
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43193 43193]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4-coumaroyl-coa hydratase|enoyl-coa hydratase}}
+
{{#set: common-name=cytidine4 in trnagly(gcc) 2'-o-methyltransferase}}
−
{{#set: ec-number=ec-4.2.1.17}}
+
{{#set: ec-number=ec-2.1.1.225}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-12478

  • direction:
    • left-to-right
  • common-name:
    • cytidine4 in trnagly(gcc) 2'-o-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6829, tRNA methylation (yeast):
    • 11 reactions found over 15 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117586
  • RHEA:





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