Difference between revisions of "RXN-12478"

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(Created page with "Category:reaction == Reaction ASNSYNB-RXN == * direction: ** left-to-right * common-name: ** l-aspartate:l-glutamine amido-ligase (amp-forming) ** asparagine synthase (glu...")
(Created page with "Category:reaction == Reaction RXN-34 == * direction: ** left-to-right * common-name: ** arginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1] == Reacti...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASNSYNB-RXN ==
+
== Reaction RXN-34 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-aspartate:l-glutamine amido-ligase (amp-forming)
+
** arginase
−
** asparagine synthase (glutamine-hydrolyzing)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.4 ec-6.3.5.4]
+
** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CANAVANINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-CANALINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13639]]
+
* Gene: [[SJ12906]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13939]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07729]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ22095]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ASPARAGINE-BIOSYNTHESIS]], L-asparagine biosynthesis I:
+
* [[PWY-31]], canavanine degradation:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12229 12229]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00578 R00578]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P22106 P22106]
 
−
** [http://www.uniprot.org/uniprot/P08243 P08243]
 
−
** [http://www.uniprot.org/uniprot/P19891 P19891]
 
−
** [http://www.uniprot.org/uniprot/P17714 P17714]
 
−
** [http://www.uniprot.org/uniprot/P19251 P19251]
 
−
** [http://www.uniprot.org/uniprot/P19252 P19252]
 
−
** [http://www.uniprot.org/uniprot/Q58516 Q58516]
 
−
** [http://www.uniprot.org/uniprot/Q9CDJ2 Q9CDJ2]
 
−
** [http://www.uniprot.org/uniprot/Q9UZJ0 Q9UZJ0]
 
−
** [http://www.uniprot.org/uniprot/O58829 O58829]
 
−
** [http://www.uniprot.org/uniprot/Q9UZL3 Q9UZL3]
 
−
** [http://www.uniprot.org/uniprot/O26514 O26514]
 
−
** [http://www.uniprot.org/uniprot/Q42792 Q42792]
 
−
** [http://www.uniprot.org/uniprot/P31752 P31752]
 
−
** [http://www.uniprot.org/uniprot/P49091 P49091]
 
−
** [http://www.uniprot.org/uniprot/P49089 P49089]
 
−
** [http://www.uniprot.org/uniprot/P49088 P49088]
 
−
** [http://www.uniprot.org/uniprot/P49090 P49090]
 
−
** [http://www.uniprot.org/uniprot/P49092 P49092]
 
−
** [http://www.uniprot.org/uniprot/P49093 P49093]
 
−
** [http://www.uniprot.org/uniprot/P49094 P49094]
 
−
** [http://www.uniprot.org/uniprot/Q43011 Q43011]
 
−
** [http://www.uniprot.org/uniprot/P93167 P93167]
 
−
** [http://www.uniprot.org/uniprot/O49076 O49076]
 
−
** [http://www.uniprot.org/uniprot/P49078 P49078]
 
−
** [http://www.uniprot.org/uniprot/Q21463 Q21463]
 
−
** [http://www.uniprot.org/uniprot/O77330 O77330]
 
−
** [http://www.uniprot.org/uniprot/P78753 P78753]
 
−
** [http://www.uniprot.org/uniprot/Q9LFU1 Q9LFU1]
 
−
** [http://www.uniprot.org/uniprot/Q9ZST7 Q9ZST7]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-aspartate:l-glutamine amido-ligase (amp-forming)|asparagine synthase (glutamine-hydrolyzing)}}
+
{{#set: common-name=arginase}}
−
{{#set: ec-number=ec-6.3.5.4}}
+
{{#set: ec-number=ec-3.5.3.1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction RXN-34

  • direction:
    • left-to-right
  • common-name:
    • arginase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-31, canavanine degradation:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12478&oldid=88258"