Difference between revisions of "RXN-12484"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTPPYPHOSKIN-RXN GTPPYPHOSKIN-RXN] == * direction: ** left-to-right * common-name: ** gtp pyrophosp...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14929 RXN-14929] == * direction: ** left-to-right * common-name: ** homogentisate geranylgerany...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTPPYPHOSKIN-RXN GTPPYPHOSKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14929 RXN-14929] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gtp pyrophosphokinase
+
** homogentisate geranylgeranyl transferase
−
** gtp diphosphokinase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.6.5 ec-2.7.6.5]
+
** [http://enzyme.expasy.org/EC/2.5.1.116 ec-2.5.1.116]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GDP-TP]][c]
+
* 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[HOMOGENTISATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-11712]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10100]]
+
* Gene: [[SJ01234]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07200]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13961]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
+
* [[PWY-7436]], vitamin E biosynthesis (tocotrienols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7436 PWY-7436]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22089 22089]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38004 38004]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00429 R00429]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9CJ94 Q9CJ94]
 
−
** [http://www.uniprot.org/uniprot/P44644 P44644]
 
−
** [http://www.uniprot.org/uniprot/Q9PDR3 Q9PDR3]
 
−
** [http://www.uniprot.org/uniprot/P0AG20 P0AG20]
 
−
** [http://www.uniprot.org/uniprot/P52560 P52560]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gtp diphosphokinase|gtp pyrophosphokinase}}
+
{{#set: common-name=homogentisate geranylgeranyl transferase}}
−
{{#set: ec-number=ec-2.7.6.5}}
+
{{#set: ec-number=ec-2.5.1.116}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction RXN-14929

  • direction:
    • left-to-right
  • common-name:
    • homogentisate geranylgeranyl transferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7436, vitamin E biosynthesis (tocotrienols): PWY-7436
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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