Difference between revisions of "RXN-12583"

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(Created page with "Category:reaction == Reaction NARINGENIN-CHALCONE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** naringenin-chalcone synthase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXN-12583 == * direction: ** left-to-right * common-name: ** pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating) ** pyruva...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NARINGENIN-CHALCONE-SYNTHASE-RXN ==
+
== Reaction RXN-12583 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** naringenin-chalcone synthase
+
** pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
−
* ec-number:
+
** pyruvate dehydrogenase (nad+)
−
** [http://enzyme.expasy.org/EC/2.3.1.74 ec-2.3.1.74]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 3 [[MALONYL-COA]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 3 [[PROTON]][c] '''=>''' 3 [[CARBON-DIOXIDE]][c] '''+''' 4 [[CO-A]][c] '''+''' 1 [[CPD-20012]][c]
+
* 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[THIAMINE-PYROPHOSPHATE]][c] '''=>''' 1 [[2-ALPHA-HYDROXYETHYL-THPP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18059]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ09312]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00971]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14925]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 25:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20077]]
+
* Gene: [[SJ19470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01042]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5135]], xanthohumol biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7397]], naringenin biosynthesis (engineered):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6316]], aromatic polyketides biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7897]], flavonoid di-C-glucosylation:
 
−
** '''3''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR102428
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11129 11129]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01613 R01613]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00014 R00014]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q43188 Q43188]
 
−
** [http://www.uniprot.org/uniprot/O04934 O04934]
 
−
** [http://www.uniprot.org/uniprot/P17957 P17957]
 
−
** [http://www.uniprot.org/uniprot/P30081 P30081]
 
−
** [http://www.uniprot.org/uniprot/P30080 P30080]
 
−
** [http://www.uniprot.org/uniprot/Q9S9C0 Q9S9C0]
 
−
** [http://www.uniprot.org/uniprot/Q9S9B9 Q9S9B9]
 
−
** [http://www.uniprot.org/uniprot/P23419 P23419]
 
−
** [http://www.uniprot.org/uniprot/P26018 P26018]
 
−
** [http://www.uniprot.org/uniprot/P22928 P22928]
 
−
** [http://www.uniprot.org/uniprot/P30079 P30079]
 
−
** [http://www.uniprot.org/uniprot/Q01287 Q01287]
 
−
** [http://www.uniprot.org/uniprot/Q01288 Q01288]
 
−
** [http://www.uniprot.org/uniprot/P51078 P51078]
 
−
** [http://www.uniprot.org/uniprot/P51080 P51080]
 
−
** [http://www.uniprot.org/uniprot/P30078 P30078]
 
−
** [http://www.uniprot.org/uniprot/Q01286 Q01286]
 
−
** [http://www.uniprot.org/uniprot/P30073 P30073]
 
−
** [http://www.uniprot.org/uniprot/P30074 P30074]
 
−
** [http://www.uniprot.org/uniprot/P30076 P30076]
 
−
** [http://www.uniprot.org/uniprot/P30077 P30077]
 
−
** [http://www.uniprot.org/uniprot/P51089 P51089]
 
−
** [http://www.uniprot.org/uniprot/P51075 P51075]
 
−
** [http://www.uniprot.org/uniprot/P16107 P16107]
 
−
** [http://www.uniprot.org/uniprot/P51077 P51077]
 
−
** [http://www.uniprot.org/uniprot/P51079 P51079]
 
−
** [http://www.uniprot.org/uniprot/P30075 P30075]
 
−
** [http://www.uniprot.org/uniprot/P51081 P51081]
 
−
** [http://www.uniprot.org/uniprot/P51082 P51082]
 
−
** [http://www.uniprot.org/uniprot/P48390 P48390]
 
−
** [http://www.uniprot.org/uniprot/P48405 P48405]
 
−
** [http://www.uniprot.org/uniprot/P48406 P48406]
 
−
** [http://www.uniprot.org/uniprot/P23569 P23569]
 
−
** [http://www.uniprot.org/uniprot/P13416 P13416]
 
−
** [http://www.uniprot.org/uniprot/P13417 P13417]
 
−
** [http://www.uniprot.org/uniprot/P17818 P17818]
 
−
** [http://www.uniprot.org/uniprot/P13114 P13114]
 
−
** [http://www.uniprot.org/uniprot/P08894 P08894]
 
−
** [http://www.uniprot.org/uniprot/P22924 P22924]
 
−
** [http://www.uniprot.org/uniprot/P22925 P22925]
 
−
** [http://www.uniprot.org/uniprot/P22926 P22926]
 
−
** [http://www.uniprot.org/uniprot/P22927 P22927]
 
−
** [http://www.uniprot.org/uniprot/P06515 P06515]
 
−
** [http://www.uniprot.org/uniprot/P24826 P24826]
 
−
** [http://www.uniprot.org/uniprot/P19168 P19168]
 
−
** [http://www.uniprot.org/uniprot/P24825 P24825]
 
−
** [http://www.uniprot.org/uniprot/P24824 P24824]
 
−
** [http://www.uniprot.org/uniprot/Q40005 Q40005]
 
−
** [http://www.uniprot.org/uniprot/Q96562 Q96562]
 
−
** [http://www.uniprot.org/uniprot/O22047 O22047]
 
−
** [http://www.uniprot.org/uniprot/O04971 O04971]
 
−
** [http://www.uniprot.org/uniprot/P48389 P48389]
 
−
** [http://www.uniprot.org/uniprot/P48398 P48398]
 
−
** [http://www.uniprot.org/uniprot/P48399 P48399]
 
−
** [http://www.uniprot.org/uniprot/Q96568 Q96568]
 
−
** [http://www.uniprot.org/uniprot/P48397 P48397]
 
−
** [http://www.uniprot.org/uniprot/O04966 O04966]
 
−
** [http://www.uniprot.org/uniprot/O04967 O04967]
 
−
** [http://www.uniprot.org/uniprot/O04968 O04968]
 
−
** [http://www.uniprot.org/uniprot/O04969 O04969]
 
−
** [http://www.uniprot.org/uniprot/O04970 O04970]
 
−
** [http://www.uniprot.org/uniprot/Q41292 Q41292]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=naringenin-chalcone synthase}}
+
{{#set: common-name=pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)|pyruvate dehydrogenase (nad+)}}
−
{{#set: ec-number=ec-2.3.1.74}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=6}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-12583

  • direction:
    • left-to-right
  • common-name:
    • pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
    • pyruvate dehydrogenase (nad+)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR102428
  • LIGAND-RXN:





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